View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3656_low_10 (Length: 409)

Name: NF3656_low_10
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3656_low_10
NF3656_low_10
[»] chr7 (1 HSPs)
chr7 (26-400)||(8694062-8694436)
[»] chr3 (24 HSPs)
chr3 (22-380)||(28144262-28144617)
chr3 (22-399)||(28079772-28080131)
chr3 (23-380)||(27998962-27999316)
chr3 (19-399)||(19050021-19050395)
chr3 (19-399)||(17748701-17749075)
chr3 (22-400)||(28047781-28048153)
chr3 (22-261)||(28178527-28178754)
chr3 (22-382)||(27910165-27910522)
chr3 (90-400)||(28130317-28130621)
chr3 (22-116)||(27967894-27967988)
chr3 (285-382)||(28471950-28472047)
chr3 (285-382)||(28491991-28492088)
chr3 (285-382)||(28512972-28513069)
chr3 (210-400)||(11409158-11409342)
chr3 (123-253)||(27963244-27963374)
chr3 (28-253)||(27463738-27463963)
chr3 (19-95)||(28471699-28471775)
chr3 (19-95)||(28491740-28491816)
chr3 (24-67)||(11409467-11409510)
chr3 (205-249)||(26211865-26211909)
chr3 (205-249)||(26239072-26239116)
chr3 (19-95)||(28512745-28512821)
chr3 (281-366)||(28178425-28178510)
chr3 (208-253)||(28512898-28512943)
[»] chr4 (4 HSPs)
chr4 (22-260)||(9329453-9329694)
chr4 (22-260)||(9383236-9383477)
chr4 (317-400)||(9329928-9330008)
chr4 (317-400)||(9383711-9383791)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 26 - 400
Target Start/End: Original strand, 8694062 - 8694436
Alignment:
Q  26 catgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacattgtac 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8694062 catgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccagaaatggaaggtggcttcttaatcgacaaagacattgtac 8694161  T
Q  126 gattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatttcag 225  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8694162 gattacattctggaaaaatgtcgatcagaatcggtatgtcactgagctccattttttcgagggattcaagcttgagatcttggccaaatatgtatttcag 8694261  T
Q  226 cttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaacttggacatttctcaata 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  8694262 cttatcacaactttttattgtgatggatattagtgccggacatttctgaaacactgagagaaacggaagtattaattcaaagcttggacatttctcaata 8694361  T
Q  326 ctaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatcatcaactatttcacctctc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8694362 ctaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatcatcaactatttcacctctc 8694436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 22 - 380
Target Start/End: Complemental strand, 28144617 - 28144262
Alignment:
Q  22 agtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacatt 121  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||| |||  |||||||||||| ||||||||| || | ||||||| ||  ||| |||     
T  28144617 agtccatgaaaacatattgcatttgattggctctgattgttcttgtggcttggaagcatctccagaaatggaagatgacctcttaatggatgaagtcatg 28144518  T
Q  122 gtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatt 221  Q
    ||||||||||||| ||| ||||||||||| | ||| |||||||||   ||||||||| |||  |||||  |||||| || ||||| ||||||||||||||    
T  28144517 gtacgattacattttgggaaaatgtcgatgaaatttggtatgtcatgaagctccattgttttgagggaaccaagctggacatctttgccaaatatgtatt 28144418  T
Q  222 tcagcttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaacttggacatttctc 321  Q
    |||| |||||||||||||  ||||||||||||  |||||| ||| | |  |||    |  |||||||||||||||  |||| ||     |||||||||||    
T  28144417 tcagattatcacaactttcaattgtgatggattctagtgctggaaaatcatga---gcatagagaaacggaagtacaaattcaagtgccggacatttctc 28144321  T
Q  322 aatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcat 380  Q
    |||||||| ||| |||||||||||||| ||| |||||||||||||||| ||||||||||    
T  28144320 aatactaagaacctccagtttctgaaatattgagccttgacttgtgctttcattatcat 28144262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 399
Target Start/End: Complemental strand, 28080131 - 28079772
Alignment:
Q  22 agtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | || |||            ||||||  ||||||||| |  ||| ||||||||    
T  28080131 agtccatgaaaacatattgcatttgattgggtctgattgttcttgtggttcggaa------------atggaaaatggcttcttgagggacgaagacatt 28080044  T
Q  122 gtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatt 221  Q
    ||||||||||||||||| ||||||||||| | |||||||||| |||  |||||||||||||  | |||  |||||  || |||||||||||| |||||||    
T  28080043 gtacgattacattctgggaaaatgtcgatgaaattcggtatgccaccaagctccatttttttgacggaaccaagcaggacatcttggccaaacatgtatt 28079944  T
Q  222 tcagcttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaacttggacatttctc 321  Q
    ||||||||||||||||||||||||||||||||  |||||| |||   |  ||       ||||||||||||||||| |||| ||    |||||| ||||     
T  28079943 tcagcttatcacaactttttattgtgatggattctagtgctggaagatcatg---ggtagagagaaacggaagtataaattcaagttctggacacttctt 28079847  T
Q  322 aatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatcatcaactatttcacctct 399  Q
    |||||||| ||| |||||||||||||| ||| |||| ||||||||||||   |||| |||||||||||||||||||||    
T  28079846 aatactaagaacctccagtttctgaaatattgagccgtgacttgtgctg---ttattatcatcaactatttcacctct 28079772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 23 - 380
Target Start/End: Complemental strand, 27999316 - 27998962
Alignment:
Q  23 gtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacattg 122  Q
    ||||||||||| |||||| |||||||||| |||||||||  |||| | |  |||||||||||| ||||||||| || ||||||||| |||||||||||||    
T  27999316 gtccatgaaaatatattgcatttgattggctctgattgtgtttgtgggttggaagcatctccagaaatggaagatgtcttcttaatggacaaagacattg 27999217  T
Q  123 tacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtattt 222  Q
    |||||||||||||||| || ||||| |||| ||| ||||  |||   || || |||| |   |||||  |||| |||| ||||| |||||||||||||||    
T  27999216 tacgattacattctgggaatatgtcaatcatatttggtaaatcatcaagatcaatttctctgagggaaccaagtttgacatctttgccaaatatgtattt 27999117  T
Q  223 cagcttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaacttggacatttctca 322  Q
    |||||||||||||||||  ||| ||||||||  |||||| |||   |  |||    |  ||||||||||||||||| ||| ||  |||||||| || | |    
T  27999116 cagcttatcacaactttcaattctgatggattctagtgctggaagatcatga---gcatagagaaacggaagtattgattcaattcttggacaattataa 27999020  T
Q  323 atactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcat 380  Q
    |||| || ||  |||||||||||||| ||| |||||||||||||||| ||||||||||    
T  27999019 ataccaagaaactccagtttctgaaatattgagccttgacttgtgctttcattatcat 27998962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 19050021 - 19050395
Alignment:
Q  19 attagtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagac 118  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||| |||  ||||||| |||| | ||||||| ||  | |||||| |  ||||||    
T  19050021 attagtccatgaaaagatattgcatttgatagggtctgattgttcttgtggcttggaagcatatccagatatggaagatgcttccttaatggcgaaagac 19050120  T
Q  119 attgtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgt 218  Q
    || |||||||||||||| || ||||||||||||| |||||||||| ||   ||||  | || ||  |||||  |||| |||||||||||| |||||||||    
T  19050121 atggtacgattacattcagggaaaatgtcgatcaaattcggtatgccatgaagcttgaattgtttgagggaaccaagtttgagatcttggtcaaatatgt 19050220  T
Q  219 atttcagcttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaacttggacattt 318  Q
    |||||| ||||||||||  || |||||||||||||  || ||| ||    |  |||    | ||| |||| | ||||||||||| ||  |||||||| ||    
T  19050221 atttcaccttatcacaatgttctattgtgatggattctaatgctggtagatcatga---gcagagtgaaatgcaagtattaattcaatccttggacaatt 19050317  T
Q  319 ctcaatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatcatcaactatttcacctct 399  Q
    || |||| ||| ||||| ||| ||||||| ||||  ||| ||||||||| |||||||   |||||||||||||||||||||    
T  19050318 cttaatattaagaactttcagattctgaagcattgcgccatgacttgtgttgtcatt---atcatcaactatttcacctct 19050395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 17748701 - 17749075
Alignment:
Q  19 attagtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagac 118  Q
    |||||||||||||||||||||| ||||||| |||||||||| ||||||| |||  ||||||| |||| | ||||||| ||  | |||||| |  ||||||    
T  17748701 attagtccatgaaaagatattgcatttgatagggtctgatttttcttgtggctgggaagcatatccagatatggaagatgcttccttaatggcgaaagac 17748800  T
Q  119 attgtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgt 218  Q
    || |||||||||||||| || ||||||||||||| |||||||||| ||   ||||  | || ||  |||||  |||| |||||||||||| |||||||||    
T  17748801 atggtacgattacattcagggaaaatgtcgatcaaattcggtatgccatgaagcttgaattgtttgagggaaccaagtttgagatcttggtcaaatatgt 17748900  T
Q  219 atttcagcttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaacttggacattt 318  Q
    |||||| ||||||||||  || |||||||||||||  || ||| ||    |  |||    | ||| |||| | ||||||||||| ||  |||||||| ||    
T  17748901 atttcaccttatcacaatgttctattgtgatggattctaatgctggtagatcatga---gcagagtgaaatgcaagtattaattcaatccttggacaatt 17748997  T
Q  319 ctcaatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatcatcaactatttcacctct 399  Q
    || |||| ||| ||||| ||| ||||||| ||||  ||| ||||||||| |||||||   |||||||||||||||||||||    
T  17748998 cttaatattaagaactttcagattctgaagcattgcgccatgacttgtgttgtcatt---atcatcaactatttcacctct 17749075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 22 - 400
Target Start/End: Complemental strand, 28048153 - 28047781
Alignment:
Q  22 agtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacatt 121  Q
    |||||||||||| |||||| |||| ||||  ||||||||| ||||| |||  |||| ||||||| ||||||||| || | ||||||| ||||||||||||    
T  28048153 agtccatgaaaacatattgcatttaattgactctgattgtgcttgtggcttggaagtatctccagaaatggaagatgacctcttaatggacaaagacatt 28048054  T
Q  122 gtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatt 221  Q
    ||| ||||||||||| | |||||||| || | ||| ||||   ||   |||  ||||| || ||  ||  |||  |||| ||||| ||||||||||||||    
T  28048053 gtaggattacattcttggaaaatgtcaatgaaatttggtaaaccatcaagcctcatttcttttaaagaaccaaatttgacatctttgccaaatatgtatt 28047954  T
Q  222 tcagcttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaacttggacatttctc 321  Q
    ||||||||||||||||||  ||| ||||||||  |||||| |||   |  |||    | ||  ||||||||||||||| || ||  |||||||| ||||     
T  28047953 tcagcttatcacaactttcaattttgatggattctagtgctggaagatcatga---gcagattgaaacggaagtattatttcaattcttggacacttctt 28047857  T
Q  322 aatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatcatcaactatttcacctctc 400  Q
    |||||||| ||| | || ||||||||||||| | |||||||||||||||   |||| ||||||||||||||||||||||    
T  28047856 aatactaagaacattcaatttctgaaacattgaaccttgacttgtgctg---ttattatcatcaactatttcacctctc 28047781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 28178754 - 28178527
Alignment:
Q  22 agtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacatt 121  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||  |||||||            ||||||| |||||||||||| ||||||||||||    
T  28178754 agtccatgaaaacatattgcatttgattggctctgattgttcttgtgactcagaa------------atggaagatggcttcttaatggacaaagacatt 28178667  T
Q  122 gtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatt 221  Q
    ||| ||||||||||||| ||||||||||||| |||||| ||| ||   ||||||| |||||  || ||  |||| |||| |||||| |||||||||||||    
T  28178666 gtaggattacattctgggaaaatgtcgatcaaattcggaatgccatcaagctccaattttttgagcgaaccaagtttgacatcttgaccaaatatgtatt 28178567  T
Q  222 tcagcttatcacaactttttattgtgatggatattagtgc 261  Q
    ||| ||| ||||||  || |||| |||||||| |||||||    
T  28178566 tcaacttgtcacaatcttctattttgatggattttagtgc 28178527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 27910522 - 27910165
Alignment:
Q  22 agtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacatt 121  Q
    |||||||||||| |||||| |||||||||| | ||||||||||| | |||  |||| ||||||| ||||||||| || | ||||||| |   ||| |||     
T  27910522 agtccatgaaaacatattgcatttgattggctttgattgttcttctggcttggaagtatctccagaaatggaagatgacctcttaatgggtgaagtcatg 27910423  T
Q  122 gtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatt 221  Q
    | || || ||||   || |||||||| ||||  || ||||   |||| |||||||| |||   |||||  |||| |||| ||||| ||||||||||||||    
T  27910422 gcaccataacatatagggaaaatgtcaatcatttttggtaaaccactaagctccatatttatgagggaaccaagtttgacatctttgccaaatatgtatt 27910323  T
Q  222 tcagcttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaacttggacatttctc 321  Q
    |||||||||||||||| |  ||||||||||||  || ||| |||   |  ||| |    ||  |||||||||||||||||| ||  ||||||||  | |     
T  27910322 tcagcttatcacaactatcaattgtgatggattctaatgctggaagatcatgagaa---gattgaaacggaagtattaattcaattcttggacaactata 27910226  T
Q  322 aatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatca 382  Q
    |||||||| ||||| |||||||| ||||||| |||| ||||||||||||||||||||||||    
T  27910225 aatactaagaactttcagtttcttaaacattgagccatgacttgtgctgtcattatcatca 27910165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 400
Target Start/End: Complemental strand, 28130621 - 28130317
Alignment:
Q  90 tggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctaggga 189  Q
    |||||| || ||||||||| | | ||| ||| ||||| ||||||||||| ||||| | ||||| |||||||||| ||   |||  ||||||||  |||||    
T  28130621 tggaagatgtcttcttaatgggcgaagccatggtacggttacattctgggaaaatatggatcaaattcggtatgccatcaagcatcatttttttgaggga 28130522  T
Q  190 ttcaagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaac 289  Q
      |||| |||| ||||| |||||||||||| | |||||||||||||||||| ||||||||||||  |||||  |||   |  |||      ||| |||||    
T  28130521 accaagtttgacatctttgccaaatatgtactgcagcttatcacaacttttaattgtgatggattctagtgttggaagatcatga---ggagagtgaaac 28130425  T
Q  290 ggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatcatcaacta 389  Q
    |||||||||||||  |  |||||||| |||| |||||||| ||||| || ||||||||||||| |||| ||||||||| | |||||   |||||| ||||    
T  28130424 ggaagtattaattcgattcttggacacttcttaatactaagaactttcaatttctgaaacattgagccatgacttgtgttatcatt---atcatcgacta 28130328  T
Q  390 tttcacctctc 400  Q
    |||||||||||    
T  28130327 tttcacctctc 28130317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 27967988 - 27967894
Alignment:
Q  22 agtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaag 116  Q
    |||||||||||| |||||| |||||||||| |||||||| |||||| |||| ||||||| |||||||||||||| ||||  |||||| |||||||    
T  27967988 agtccatgaaaacatattgcatttgattggctctgattgctcttgtggctctgaagcatatccaaaaatggaagatggccccttaatggacaaag 27967894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 28471950 - 28472047
Alignment:
Q  285 gaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatca 382  Q
    |||||||||||||||||| ||  |||||||| |||| |||||||| ||||| |||||||||||||||| |||| |||||| || | ||||||||||||    
T  28471950 gaaacggaagtattaattcaattcttggacacttcttaatactaagaactttcagtttctgaaacattgagccatgacttttgttatcattatcatca 28472047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 28491991 - 28492088
Alignment:
Q  285 gaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatca 382  Q
    |||||||||||||||||| ||  |||||||| |||| |||||||| ||||| |||||||||||||||| |||| |||||| || | ||||||||||||    
T  28491991 gaaacggaagtattaattcaattcttggacacttcttaatactaagaactttcagtttctgaaacattgagccatgacttttgttatcattatcatca 28492088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 28512972 - 28513069
Alignment:
Q  285 gaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatca 382  Q
    |||||||||||||||||| ||  |||||||| |||| |||||||| ||||| |||||||||||||||| |||| |||||| || | ||||||||||||    
T  28512972 gaaacggaagtattaattcaattcttggacacttcttaatactaagaactttcagtttctgaaacattgagccatgacttttgttatcattatcatca 28513069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 400
Target Start/End: Complemental strand, 11409342 - 11409158
Alignment:
Q  210 caaatatgtatttcagcttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaact 309  Q
    |||||||||||||||||  |||||||||||| ||||||||||||  |||||| ||| |  ||   | ||  |||||||  ||||||||||||| ||   |    
T  11409342 caaatatgtatttcagcaaatcacaacttttcattgtgatggattctagtgctgga-agatcaccagca--gagagaagtggaagtattaattcaatttt 11409246  T
Q  310 tggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatcatcaactatttcacctctc 400  Q
    |||||| |||| ||| |||| || ||||||||||||||||| | |||| ||||||| | ||||||||||   |||||||||||||||||||    
T  11409245 tggacacttcttaatcctaagaatttccagtttctgaaacaatgagccatgacttgcgatgtcattatc---atcaactatttcacctctc 11409158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 253
Target Start/End: Complemental strand, 27963374 - 27963244
Alignment:
Q  123 tacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtattt 222  Q
    |||||||||||| ||| ||||||||||| | |||||||| | |||  ||||||| || ||  |||||  |||| |  | || || |||||||||||||||    
T  27963374 tacgattacattttgggaaaatgtcgattaaattcggtaagccaccaagctccaattgtttgagggaaccaagttcaacatttttgccaaatatgtattt 27963275  T
Q  223 cagcttatcacaactttttattgtgatggat 253  Q
    ||||||||||||||||  ||||||| |||||    
T  27963274 cagcttatcacaacttgctattgtggtggat 27963244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 253
Target Start/End: Original strand, 27463738 - 27463963
Alignment:
Q  28 tgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacattgtacga 127  Q
    ||||||||| ||| |||| |||||| |||||| | ||||| |||  || ||||||||| || |  ||| |||   |||||| |||  |||||| ||| |     
T  27463738 tgaaaagatgttgcatttcattgggcctgattctgcttgtggcttggaggcatctccagaagtataagatggtcccttaatggacgtagacatggtatgg 27463837  T
Q  128 ttacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatttcagct 227  Q
    ||||||||||| ||||| || |||| ||| |||||| ||   |||| |||| |||| |||||  ||||   || || || ||||||||||||||| ||||    
T  27463838 ttacattctgggaaaatatcaatcaaatttggtatgccatcaagcttcattgtttcaagggaaccaagtgggacatttttgccaaatatgtatttaagct 27463937  T
Q  228 tatcacaactttttattgtgatggat 253  Q
    ||||||||||| ||||| ||||||||    
T  27463938 tatcacaacttcttattctgatggat 27463963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 28471699 - 28471775
Alignment:
Q  19 attagtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaag 95  Q
    ||||||||||||||||||||||  |||||||||  ||||||||  |||| ||| |||||||| |||| |||||||||    
T  28471699 attagtccatgaaaagatattgcgtttgattggacctgattgtgtttgtggcttagaagcatatccagaaatggaag 28471775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 28491740 - 28491816
Alignment:
Q  19 attagtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaag 95  Q
    ||||||||||||||||||||||  |||||||||  ||||||||  |||| ||| |||||||| |||| |||||||||    
T  28491740 attagtccatgaaaagatattgcgtttgattggacctgattgtgtttgtggcttagaagcatatccagaaatggaag 28491816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 11409510 - 11409467
Alignment:
Q  24 tccatgaaaagatattgaatttgattgggtctgattgttcttgt 67  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  11409510 tccatgaaaagatattgcatttgattgggtctgattgtgcttgt 11409467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 26211865 - 26211909
Alignment:
Q  205 ttggccaaatatgtatttcagcttatcacaactttttattgtgat 249  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||    
T  26211865 ttggccaaatatgtatttcagcttgtcacaacattttattctgat 26211909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 26239072 - 26239116
Alignment:
Q  205 ttggccaaatatgtatttcagcttatcacaactttttattgtgat 249  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||    
T  26239072 ttggccaaatatgtatttcagcttgtcacaacattttattttgat 26239116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 28512745 - 28512821
Alignment:
Q  19 attagtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaag 95  Q
    ||||||||||||||||||||||  |||||||||  | ||||||  |||| ||| |||||||| |||| |||||||||    
T  28512745 attagtccatgaaaagatattgcgtttgattggacccgattgtgtttgtggcttagaagcatatccagaaatggaag 28512821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 366
Target Start/End: Complemental strand, 28178510 - 28178425
Alignment:
Q  281 gagagaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgt 366  Q
    |||||||||||||||||||||| ||  || |||||  |||||| | ||| |||||  |||||| |||||||| |||| ||||||||    
T  28178510 gagagaaacggaagtattaattcaattctcggacagctctcaacaataagaacttttagtttcggaaacattgagccatgacttgt 28178425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 28512898 - 28512943
Alignment:
Q  208 gccaaatatgtatttcagcttatcacaactttttattgtgatggat 253  Q
    ||||||||||||||||||||||| |||||| |  ||||||||||||    
T  28512898 gccaaatatgtatttcagcttattacaactatcaattgtgatggat 28512943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 9329453 - 9329694
Alignment:
Q  22 agtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaaga---c 118  Q
    |||||||||||| |||||| ||||||| |||||||||||||||||| |||  ||||||| |||| | ||||||| ||    |||| | || |||||   |    
T  9329453 agtccatgaaaatatattgcatttgatagggtctgattgttcttgtggcttggaagcatatccagatatggaagatgctcccttactggagaaagatcac 9329552  T
Q  119 attgtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgt 218  Q
    || | | ||||||||| ||| ||||||||||||| ||| |||||| ||   | ||||| |  ||| || ||  |||| |||| |||||  ||||||||||    
T  9329553 atggcatgattacattatgggaaaatgtcgatcaaatttggtatgccatcaaactccaatgattcgagagaaccaagtttgacatcttcaccaaatatgt 9329652  T
Q  219 atttcagcttatcacaactttttattgtgatggatattagtg 260  Q
    | |||||||||||||||||||||||| |||||||| ||||||    
T  9329653 aattcagcttatcacaactttttattatgatggattttagtg 9329694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 9383236 - 9383477
Alignment:
Q  22 agtccatgaaaagatattgaatttgattgggtctgattgttcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaaga---c 118  Q
    |||||||||||| |||||| ||||||| |||||||||||||||||| |||  ||||||| |||| | ||||||| ||    |||| | || |||||   |    
T  9383236 agtccatgaaaatatattgcatttgatagggtctgattgttcttgtggcttggaagcatatccagatatggaagatgctcccttactggagaaagatcac 9383335  T
Q  119 attgtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgt 218  Q
    || | | ||||||||| ||| ||||||||||||| ||| |||||| ||   | ||||| |  ||| || ||  |||| |||| |||||  ||||||||||    
T  9383336 atggcatgattacattatgggaaaatgtcgatcaaatttggtatgccatcaaactccaatgattcgagagaaccaagtttgacatcttcaccaaatatgt 9383435  T
Q  219 atttcagcttatcacaactttttattgtgatggatattagtg 260  Q
    | |||||||||||||||||||||||| |||||||| ||||||    
T  9383436 aattcagcttatcacaactttttattatgatggattttagtg 9383477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 400
Target Start/End: Original strand, 9329928 - 9330008
Alignment:
Q  317 ttctcaatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatcatcaactatttcacctctc 400  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||   | |||||||||||||    
T  9329928 ttctcaatactaataacttccagtttcttaaacattgagccttgacttgtgctttcattatcatca---attatttcacctctc 9330008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 400
Target Start/End: Original strand, 9383711 - 9383791
Alignment:
Q  317 ttctcaatactaataacttccagtttctgaaacattaagccttgacttgtgctgtcattatcatcatcaactatttcacctctc 400  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||   | |||||||||||||    
T  9383711 ttctcaatactaataacttccagtttcttaaacattgagccttgacttgtgctttcattatcatca---attatttcacctctc 9383791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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