View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3656_low_11 (Length: 407)

Name: NF3656_low_11
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3656_low_11
NF3656_low_11
[»] chr1 (11 HSPs)
chr1 (11-390)||(4872395-4872756)
chr1 (86-142)||(6326689-6326745)
chr1 (85-142)||(14508749-14508806)
chr1 (97-141)||(12535423-12535467)
chr1 (86-142)||(28239162-28239218)
chr1 (86-141)||(12532934-12532989)
chr1 (99-142)||(28231589-28231632)
chr1 (97-142)||(28326411-28326456)
chr1 (186-238)||(677215-677263)
chr1 (75-141)||(12540654-12540720)
chr1 (97-142)||(47569252-47569297)
[»] chr5 (1 HSPs)
chr5 (85-142)||(1717979-1718036)
[»] chr2 (2 HSPs)
chr2 (85-142)||(9066378-9066435)
chr2 (101-142)||(9068561-9068602)
[»] chr3 (1 HSPs)
chr3 (91-143)||(47924856-47924908)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 4872756 - 4872395
Alignment:
Q  11 caaaggcagaggcaagggcaacattaaaacttggacagggaaggatgtaaagtggtggctctggcccaaattgcctaaagaaggcgattgcttgtttaaa 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4872756 caaaagcagaggcaagggcaacattaaaacttggacagggaaggatgtaaagtggtggctctggcccaaattgcctaaagaaggtgattgcttgtttaaa 4872657  T
Q  111 ttgaccgaggatgcaatagccatagattagatagattacgatatatagtagaaccaaagctgatattcttagcagtcatttcagaataaaaatcataggc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4872656 ttgaccgaggatgcaatagccatagattagatagattacgatatatagtagaaccacagctgatattcttagcagtcatttcagaataaaaatcataggc 4872557  T
Q  211 ttgatgtacgtacaagtctatctttgcacagcctgcatattatgtacctgtagaacatattcgtgaaggctgttaagatccatctctatctttctgaaca 310  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||                  ||    
T  4872556 ttgatgtacgtacaagtctatctttgcacagcctgcgtattatgtacctgtagaacatattcgtgaaggctgttaagatc------------------ca 4872475  T
Q  311 agtggatggctcttttagtttcacctatctcacataagctaccgactagatgatgataagtttacagctcaaccgaaaac 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872474 agtggatggctcttttagtttcacctatctcacataagctaccgactagatgatgataagtttacagctcaaccgaaaac 4872395  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 6326689 - 6326745
Alignment:
Q  86 taaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagat 142  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  6326689 taaacaaggcaattgcttgttcaaattgaccgaggatgcaatagccatagattagat 6326745  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 14508749 - 14508806
Alignment:
Q  85 ctaaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagat 142  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||||||    
T  14508749 ctaaacaaggcaattgcttgtttaaattgaccgacgatgcaataaccatagattagat 14508806  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 12535423 - 12535467
Alignment:
Q  97 attgcttgtttaaattgaccgaggatgcaatagccatagattaga 141  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  12535423 attgcttgtttaaattgaccggtgatgcaatagccatagattaga 12535467  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 28239218 - 28239162
Alignment:
Q  86 taaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagat 142  Q
    |||||||| | ||||| |||||||||||||||||||||||||| ||||||| |||||    
T  28239218 taaagaagtcaattgcctgtttaaattgaccgaggatgcaataaccatagactagat 28239162  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 12532934 - 12532989
Alignment:
Q  86 taaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattaga 141  Q
    |||| ||||| |||||||||||||||||||||  |||| |||||||||||||||||    
T  12532934 taaacaaggcaattgcttgtttaaattgaccgttgatgtaatagccatagattaga 12532989  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 28231632 - 28231589
Alignment:
Q  99 tgcttgtttaaattgaccgaggatgcaatagccatagattagat 142  Q
    ||||| |||||||||||||||||||||||| |||||||||||||    
T  28231632 tgcttctttaaattgaccgaggatgcaataaccatagattagat 28231589  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 28326456 - 28326411
Alignment:
Q  97 attgcttgtttaaattgaccgaggatgcaatagccatagattagat 142  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||||    
T  28326456 attgcttgtttaaattgaccgatgatacaatagccaaagattagat 28326411  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 677263 - 677215
Alignment:
Q  186 tcatttcagaataaaaatcataggcttgatgtacgtacaagtctatctttgca 238  Q
    ||||||||||||| ||||||||||||||||    |||||||||||||||||||    
T  677263 tcatttcagaatataaatcataggcttgat----gtacaagtctatctttgca 677215  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 12540720 - 12540654
Alignment:
Q  75 cccaaattgcctaaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattaga 141  Q
    ||||||||  ||||| ||||| |||||||| |||||||||||   ||||||||||||||||| ||||    
T  12540720 cccaaattctctaaacaaggcaattgcttgcttaaattgaccagtgatgcaatagccatagactaga 12540654  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 47569297 - 47569252
Alignment:
Q  97 attgcttgtttaaattgaccgaggatgcaatagccatagattagat 142  Q
    ||||||||||| |||||||| ||||||||||| |||||| ||||||    
T  47569297 attgcttgtttgaattgacccaggatgcaataaccataggttagat 47569252  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 1718036 - 1717979
Alignment:
Q  85 ctaaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagat 142  Q
    ||||| ||||| |||||||||||||||||||| | ||||||||| |||||||||||||    
T  1718036 ctaaacaaggcaattgcttgtttaaattgaccaacgatgcaataaccatagattagat 1717979  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 9066435 - 9066378
Alignment:
Q  85 ctaaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagat 142  Q
    ||||| ||||| |||||| ||||||||||||||| ||| ||||| |||||||||||||    
T  9066435 ctaaacaaggcaattgctggtttaaattgaccgacgatacaataaccatagattagat 9066378  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 9068602 - 9068561
Alignment:
Q  101 cttgtttaaattgaccgaggatgcaatagccatagattagat 142  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  9068602 cttgtttaaattgaccaacgatgcaatagccatagattagat 9068561  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 47924856 - 47924908
Alignment:
Q  91 aaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagata 143  Q
    ||||| || ||||||||||||| ||||| |||||||||||||| |||||||||    
T  47924856 aaggcaatcgcttgtttaaattcaccgatgatgcaatagccattgattagata 47924908  T

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