View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_low_12 (Length: 379)
Name: NF3656_low_12
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 34673300 - 34673111
Alignment:
| Q |
24 |
acacacaattgacatttaagaggtaacgttctcgtgaacactttatccatcaattatattcctcggatggagtcataagatgtgaatgtaggatccatcc |
123 |
Q |
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| T |
34673300 |
acacacaactgacatttaaggggtaacgttctcgtgaacactttatccatcaattctatccctcagatggagtcataagatgtgaatgtaggatccatcc |
34673201 |
T |
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| Q |
124 |
gaggtatagaatatgaagatgtagtagaaatcggtattatacacactaacacttgcgctaaatcttgatttttaatgtttgctccgcttg |
213 |
Q |
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| T |
34673200 |
gaggtatagaataggaagatgtagtagaaatcggtattatacacactaacacttgcgctaaatcttgatttttaatgtttattccgcttg |
34673111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 250 - 368
Target Start/End: Complemental strand, 34673074 - 34672956
Alignment:
| Q |
250 |
catatcttgatccaactttttaagtaacgaaatcgtattgatcacttaattatttttatttacaaatattttttctaaaaagtgtaaggattcaccttta |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
34673074 |
catatcttgatccaactttttaagtaacgaaatcgtattgatcacttaattatttttatttacagatattttttctaaaaagtgtaaggatttaccttta |
34672975 |
T |
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| Q |
350 |
aacctatttttaggttcat |
368 |
Q |
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| T |
34672974 |
aatctatttttaggttcat |
34672956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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