View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_low_17 (Length: 272)
Name: NF3656_low_17
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 52459458 - 52459695
Alignment:
| Q |
19 |
ctgataaccacagttcaagtgctggtccaaaccttagaaggagcaggtcaatgtcctcggcttccttccaggtcaaagatccaactagatctcctacaag |
118 |
Q |
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| T |
52459458 |
ctgataaccaaagttcaagtgctggtccaaaccttagaaggagcaggtcaatgtcctcggcttccttccaggtcaaagatccaactagatctcctacaag |
52459557 |
T |
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| Q |
119 |
tagcattgctagtgatccgtatcatcaatttgagcattcgttggggtaagacccgataatctaactttgaaactgatgtttataataccttgtattagtt |
218 |
Q |
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| T |
52459558 |
tagcattgctagtgatccgtatcatcaatttgagcattcgttggggtaagacccgataatctaactttgaaactgatgtttataataccttgtattagtt |
52459657 |
T |
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| Q |
219 |
acattttgcacatattaactttggctgtactttctgtg |
256 |
Q |
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| T |
52459658 |
acattttgcacatattaactttggctgtactttctgtg |
52459695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 1288233 - 1288161
Alignment:
| Q |
40 |
ctggtccaaaccttagaaggagcaggtcaatgtcctcggcttccttccaggtcaaagatccaactagatctcc |
112 |
Q |
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||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1288233 |
ctggtccaaacctaagacggagctggtcaatctcctcggcttccttccaggtcaaagatccaactagatctcc |
1288161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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