View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_low_2 (Length: 623)
Name: NF3656_low_2
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Original strand, 40005912 - 40006520
Alignment:
| Q |
1 |
acagttttttcgattcttcccttcgtttcagcatcttccgtatttgtttcaacaacaaaatacggacaaggctagaaaatctaaggttcgaaagtagaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40005912 |
acagttttttcgattcttcccttcgtttcagcatcttccgtatttgtttcaacaacaaaatacggacaaggctagaaaatctaaggttcgaaagtagaac |
40006011 |
T |
|
| Q |
101 |
gaactcggcctcaacctatctcaacttcacttcaaagccttggtgaatcaaatcatcaaacaaggaggaatcgaggaaactgttttgaagatctcactag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40006012 |
gaactcggcctcaacctatctcaacttcacttcaaagccttggtgaatcaaatcatcaaacaaggaggaatcgaggaaactgttctgaagatctcactag |
40006111 |
T |
|
| Q |
201 |
aatcaaatatggacgaggctacataatccaaggttcgaaagtaggcttccaacgaacctgacctcaacctatctcagcctcacttcaaagccttggtgaa |
300 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40006112 |
aatcaaatatggatgaggctacataatccaaggttcgaaagtaggcttccaacgaacccgacctcaacctatctcagcctcacttcaaagccttggtgaa |
40006211 |
T |
|
| Q |
301 |
gcaaatcatcgaagattttcttcaacagaagcagcaacaaaaacagcaagagggagtttcccacaacaactatgcctatgatgattgt-gggggtcttgt |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40006212 |
gcaaatcatcgaagattttcttcaacagaagcagcaacaaaaacagcaagagggagtttcccacaacaactatgcctatgatgattgtggggggtcttgt |
40006311 |
T |
|
| Q |
400 |
catctgcgagcttagctatttattctaaattattaagattaattggaaagaaatcaaatgtatgatatggtatatacg-nnnnnnnnnttcaagaaaacc |
498 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
40006312 |
catctgcgagcttagctatttattctaaattattaagattaattggaaagaaatcaaatgtatgatatggtatatatgaaaaaaaaaattcaagaaaacc |
40006411 |
T |
|
| Q |
499 |
aatcgagtactttcaaaactcaagatggttgtgcaccatacctatttatgagcttatcaaaatttcaaaggacttaactgcttgaaaaatgatgaccata |
598 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40006412 |
aatcgagtactttcaaaactcaagacggttgtgcaccatacctatttatgtgcttatcaaaatttcaaaggacttaactgcttgaaaaatgatgaccata |
40006511 |
T |
|
| Q |
599 |
attgttttt |
607 |
Q |
| |
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||||||||| |
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| T |
40006512 |
attgttttt |
40006520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 168 - 305
Target Start/End: Complemental strand, 40005927 - 40005799
Alignment:
| Q |
168 |
gaatcgaggaaactgttttgaagatctcactagaatcaaatatggacgaggctacataatccaaggttcgaaagtaggcttccaacgaacctgacctcaa |
267 |
Q |
| |
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||||||| |||||||| ||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||||| | || |
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| T |
40005927 |
gaatcgaaaaaactgttctgaagatcttagaagaatcaaatatgcacgaggctacagaatccaaggttcgaaagtagccttacaacgaactcggcc---- |
40005832 |
T |
|
| Q |
268 |
cctatctcagcctcacttcaaagccttggtgaagcaaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
40005831 |
-----ctcagcctcacttcaaagccttggtgaagcaaa |
40005799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 162 - 346
Target Start/End: Original strand, 42150459 - 42150643
Alignment:
| Q |
162 |
aaggaggaatcgaggaaactgttttgaagatctcactagaatcaaatatggacgaggctacataatccaaggttcgaaagtaggcttccaacgaacctga |
261 |
Q |
| |
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||||| ||||||| ||||| |||||||||||| | ||||||||| |||||||| | || |||||||| |||||||| | || || || ||| || |
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| T |
42150459 |
aaggaagaatcgaagaaacagttttgaagatccttcaagaatcaaacatggacgacgtcactgaatccaagattcgaaagcaagcctcaaatgaattgga |
42150558 |
T |
|
| Q |
262 |
cctcaacctatctcagcctcacttcaaagccttggtgaagcaaatcatcgaagattttcttcaacagaagcagcaacaaaaacag |
346 |
Q |
| |
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|| |||||||||||||||| |||||||||||| || || |||||||| ||||||||||||| ||||||||| ||| || ||||| |
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| T |
42150559 |
tcttaacctatctcagcctcccttcaaagccttcgtcaaacaaatcatagaagattttcttctacagaagcaacaagaacaacag |
42150643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 606
Target Start/End: Complemental strand, 50241295 - 50241255
Alignment:
| Q |
566 |
aaggacttaactgcttgaaaaatgatgaccataattgtttt |
606 |
Q |
| |
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|||||||||||||||||| || ||||||||||||||||||| |
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| T |
50241295 |
aaggacttaactgcttgataagtgatgaccataattgtttt |
50241255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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