View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_low_20 (Length: 250)
Name: NF3656_low_20
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 43365371 - 43365182
Alignment:
| Q |
47 |
tttgaatggggcttgttcggatctctttcttttctgaagcaacaacatgagaagcctgatcttgcttccttgacctctcaaacgtattgtagcaagcaac |
146 |
Q |
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| T |
43365371 |
tttgaatggggcttgttcggatctctttcttttctgaagcaacaacatgagaagcctgatcttgcttccttgacctctcaaacgtattgtagcaagcaac |
43365272 |
T |
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| Q |
147 |
aatgaagaaaacgcagctgaatcacgtttgccgtctaaaaatcactcagcaacgtatagtagcaaacacaaaatcttgaaattgtagctt |
236 |
Q |
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| T |
43365271 |
aatgaagaaaacgcagctgaatcacgtttgccgtttgaaaatcactcagcaacgtatagtagcaaacacaaaatcttgaaattgtagctt |
43365182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 43365417 - 43365388
Alignment:
| Q |
1 |
aagtaaaagataatcaaatgggtttgtcac |
30 |
Q |
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| T |
43365417 |
aagtaaaagataatcaaatgggtttgtcac |
43365388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 24771330 - 24771388
Alignment:
| Q |
66 |
gatctctttcttttctgaagcaacaacatgagaagcctgatcttgcttccttgacctct |
124 |
Q |
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| T |
24771330 |
gatctctttcttttctgaagcaacaacacgagaagcccagtcttgcttccctgacctct |
24771388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 15576220 - 15576191
Alignment:
| Q |
1 |
aagtaaaagataatcaaatgggtttgtcac |
30 |
Q |
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| T |
15576220 |
aagtaaaagataatcaaatgggtttgtcac |
15576191 |
T |
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