View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_low_24 (Length: 242)
Name: NF3656_low_24
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 19494205 - 19493990
Alignment:
| Q |
4 |
atttgtcatccttgttctaagcttaacttgtagctcatccgaatgtgaaagaaattggagtgtctttgaaatggtgagtttctttcaaatttaagttgtg |
103 |
Q |
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| T |
19494205 |
atttgccatccgtgttctaagcttaacttgtagctcatccggatgtgaaagaaattggagtgcgtttgaaatggtgagtttctttcaaatttaagttgtg |
19494106 |
T |
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| Q |
104 |
ataatagtctaccaaattggtatatagtatattctaatgtagtttgtgtctattaggtgcatacaaagagaagaaattaaataggctgaagcagaaaaca |
203 |
Q |
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| T |
19494105 |
ataatagtctaccaaattggtatatag--tattctaatgtagtttgtgtctattaggtgcatacaaagagaag-----aaataggctgaagcagaaaaca |
19494013 |
T |
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| Q |
204 |
atgaacgatgttgtgtttgtgat |
226 |
Q |
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| T |
19494012 |
atgaatgatgttgtgtttgtgat |
19493990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 28585457 - 28585651
Alignment:
| Q |
20 |
ctaagcttaacttgtagctcatccgaatgtgaaagaaattggagtgtctttgaaatggtgagtttctttcaaatttaagttgtgataatagtctaccaaa |
119 |
Q |
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| T |
28585457 |
ctaagcttgaattgcagctcatccaaatctgaaagaaattggagtgcatttgagatgataagtttctttcaaatttaagttgtgaaaatagtctaccaaa |
28585556 |
T |
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| Q |
120 |
ttggtatatagtatattctaatgtagtttgtgtctattaggtgcatacaaagagaagaaattaaataggctgaagcagaaaacaatgaacgatgttgtgt |
219 |
Q |
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| T |
28585557 |
ttgctatata-------ctaatgtagtttgtgtctattaggtgcataaaa----aagagaataaataggctgaagcaaaaaaccatgaatgatgttgtgt |
28585645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 26339530 - 26339484
Alignment:
| Q |
20 |
ctaagcttaacttgtagctcatccgaatgtgaaagaaattggagtgt |
66 |
Q |
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| T |
26339530 |
ctaagcttgacttgtagcttatccggatgtgaaagaaattggagtgt |
26339484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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