View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3656_low_26 (Length: 242)
Name: NF3656_low_26
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 21195517 - 21195735
Alignment:
| Q |
11 |
cagagatcttgctggatggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21195517 |
cagagatcttgctggatggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
21195616 |
T |
|
| Q |
111 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21195617 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
21195716 |
T |
|
| Q |
211 |
ctccttcacaggagaattc |
229 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21195717 |
ctccttcacaggagaattc |
21195735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 27251266 - 27251484
Alignment:
| Q |
11 |
cagagatcttgctggatggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27251266 |
cagagatcttgctggatggagaacatggtattgatagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
27251365 |
T |
|
| Q |
111 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27251366 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
27251465 |
T |
|
| Q |
211 |
ctccttcacaggagaattc |
229 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27251466 |
ctccttcacaggagaattc |
27251484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 27268052 - 27268268
Alignment:
| Q |
11 |
cagagatcttgctggatggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
110 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27268052 |
cagagatcttgcttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
27268151 |
T |
|
| Q |
111 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
210 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
27268152 |
ccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactatatcctcaag |
27268251 |
T |
|
| Q |
211 |
ctccttcacaggagaat |
227 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27268252 |
ctccttcacaggagaat |
27268268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 49364732 - 49364671
Alignment:
| Q |
101 |
agaacaatgtccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgag |
162 |
Q |
| |
|
|||||||||||| |||||||| ||| | |||||||||||||||||||| || || |||||| |
|
|
| T |
49364732 |
agaacaatgtcctttttgagggaattttgctcaagcctagcatggttacacctggtgctgag |
49364671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University