View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_low_5 (Length: 472)
Name: NF3656_low_5
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 19494241 - 19494329
Alignment:
| Q |
1 |
ccacccttgtgccggagttttggttttaagagcagccattgctattggactaccaaaaaactatgctttcctcttaaaatcttcaagtt |
89 |
Q |
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| T |
19494241 |
ccaccattgtgccggagttttggttttaagagcagccattgctattggactaccaaaaaactttgctttcctcttaaaatcttcaagtt |
19494329 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 276
Target Start/End: Complemental strand, 19845 - 19673
Alignment:
| Q |
103 |
actaatttcttgaacatctccaaccatcctttccaaacaatcatatagtccacgtttcacttcaaagtcggctttaaaatcaacaccgtaatgcaattga |
202 |
Q |
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| T |
19845 |
actattttcttcaacatctcccaccatcctttctgagcaatcatatagtccacatttgacttcatagt-agctttaaaaacaggtctgtaatgtagctaa |
19747 |
T |
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| Q |
203 |
ggatttaggtaataatcggcaacatgcaaaggcctatgcagctgtctatcccacctctcatcaataatatccca |
276 |
Q |
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| T |
19746 |
ggattgagatatcagcctgcagcatgcaaaggcctatggagttgtttatcccacttctcattaatgatatccca |
19673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 445
Target Start/End: Complemental strand, 15555835 - 15555800
Alignment:
| Q |
410 |
ttgaattttctcctttgcttgatccattgcttcata |
445 |
Q |
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| T |
15555835 |
ttgaatttgctcctttgcttgatccattgcttcata |
15555800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 9475137 - 9475177
Alignment:
| Q |
249 |
tatcccacctctcatcaataatatcccacaaaggcttgaaa |
289 |
Q |
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| T |
9475137 |
tatcccacctctcatcaattatatcccataaaggcttgaaa |
9475177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 445
Target Start/End: Original strand, 8989153 - 8989188
Alignment:
| Q |
410 |
ttgaattttctcctttgcttgatccattgcttcata |
445 |
Q |
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| T |
8989153 |
ttgaatttgctcctttgcttgatccattgcttcata |
8989188 |
T |
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