View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_low_8 (Length: 438)
Name: NF3656_low_8
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 373
Target Start/End: Complemental strand, 51740362 - 51739998
Alignment:
| Q |
9 |
gagatgaagaacaagcgttacaaatactataaaccccaacatcactgacattactgcatttattgatgtccaaaaacttgatccgttggcaaccacttgc |
108 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740362 |
gagaagaagaacaagcgttacaaatactagaaaccccaacatcactgacagtactgcatttattgatgtccaaaaacttgatccgttggcaaccacttgc |
51740263 |
T |
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| Q |
109 |
aaggctcatcagcccattgtcagtgatacttgtgcatccttgcaataccaactcttctaaattacgacagtttttggacagagcttctagtatactattc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51740262 |
aaggctcatcagcccattgtcagtgatacttgtgcatccttgcaataccaactcttctaaattacgacagtttttggacagagcttctagtatactatcc |
51740163 |
T |
|
| Q |
209 |
gtaacaaatctgcacccagtaagatgcaatatccacaggtcgcaacagcctttggcaacagcggacaatcccttatcagtcagctttcggcagtaggaca |
308 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740162 |
gtaacaaatctgcacccagtaagatgcaatatccgcaggtcgcaacagcctttggcaacagcggacaatcccttatcagtcagctttcggcagtaggaca |
51740063 |
T |
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| Q |
309 |
catccaaggactgtaataaggaaaggccgtcaccaatagctatcattccaacatccgtaattcct |
373 |
Q |
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| T |
51740062 |
catccaaggaatgtaataaggaaaggccgtcaccaatagctttcattccaacatccgtaattcct |
51739998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 51738473 - 51738421
Alignment:
| Q |
371 |
cctttacagttatgcaaattgaggatattcaagcatctaaagccattagcaat |
423 |
Q |
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| T |
51738473 |
cctttacagttatgcaaattgaggatcctcaagcatctaaagccattagcaat |
51738421 |
T |
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