View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3656_low_9 (Length: 429)
Name: NF3656_low_9
Description: NF3656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3656_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 24482467 - 24482316
Alignment:
| Q |
10 |
catcatcatcgatcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagaccgcaatgagacgtacacactccaagcgtcc |
109 |
Q |
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| T |
24482467 |
catcatcatcggtcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagactacaatgagacgtacacactccaagcgtcc |
24482368 |
T |
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| Q |
110 |
atgtcatgaacctgcagcttcctcgttcaaccatgcaactcatttctcccat |
161 |
Q |
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| T |
24482367 |
atgtcatgaacctgcagcttcctcgttcaaccatgcaactcatttctcccat |
24482316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 326 - 411
Target Start/End: Complemental strand, 24480367 - 24480282
Alignment:
| Q |
326 |
ataatgctttggtacttgtgaggaaatgtacacattgtgaggcgacgaagattccacaatggaggatagggtcagaggggccaaaa |
411 |
Q |
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| T |
24480367 |
ataatgctttggtacttgtgaggaaatgtacacattgtgaggcgacgaagactccacaatggaggatagggtcagaggggccaaaa |
24480282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 14150458 - 14150673
Alignment:
| Q |
10 |
catcatcatcgatcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagaccgcaatgagacgtacacactccaagcgtcc |
109 |
Q |
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| T |
14150458 |
catcatcatcggtcaacaaggaggattttgtgctccttgaaagcagtagttcacctgctcatgaaaagaccacaatgagacgtacacgcaccaagcgtcc |
14150557 |
T |
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| Q |
110 |
atgtcatg-aacctgcag-cttcctcgttcaaccatgcaactcatttctccca--ttctctttcataggggagaatatgcagaatagtattatctacaat |
205 |
Q |
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| T |
14150558 |
acatcttgcaaccttcagcccacctcgttcaaccatgcaacccatttctcccattttctcctttgtagaagagaatatgcagaataatattatctccaat |
14150657 |
T |
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| Q |
206 |
aaggcggtgtcttcag |
221 |
Q |
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|||||||||||||||| |
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| T |
14150658 |
aaggcggtgtcttcag |
14150673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 14151216 - 14150957
Alignment:
| Q |
10 |
catcatcatcgatcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagaccgcaatgagacgtacacactccaagcgtcc |
109 |
Q |
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| T |
14151216 |
catcatcatcagtctacaaggaggattttgtgctccatgaaagcagtagttcacccactcataaaaagaccacaatgatacgtacacgctccaagcgtcc |
14151117 |
T |
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| Q |
110 |
atgtcatg-aacctgcagcttcctcgttcaaccatgcaactcatttctcccatt--ctctttcataggggagaatatgcagaatagtattatctacaata |
206 |
Q |
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| T |
14151116 |
acgtcctgcaagcttcagc-ccctcgttcaaccatgcaactcatttctccaatttcctcttttgtaggggagaatatgcagaatagtattagtgttatct |
14151018 |
T |
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| Q |
207 |
aggcggtgtcttcagaaaactttcttgactcaaattgcggtcaagaaacgaaagttttctt |
267 |
Q |
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|| |||||||||||||||||||| ||||||||||| | |||||||| |||| |||||| |
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| T |
14151017 |
cggaggtgtcttcagaaaactttcccgactcaaattgtagacaagaaacaaaagctttctt |
14150957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 14150930 - 14150881
Alignment:
| Q |
293 |
caaaggcaccgcttattgcttctctaggagaccataatgctttggtactt |
342 |
Q |
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| T |
14150930 |
caaaggcaccacttattgctgctccaggagaccataatgctttggtactt |
14150881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 14150751 - 14150800
Alignment:
| Q |
293 |
caaaggcaccgcttattgcttctctaggagaccataatgctttggtactt |
342 |
Q |
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| T |
14150751 |
caaaggcatcacttattgctgctccaagagaccataatgctttggtactt |
14150800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 52421885 - 52422287
Alignment:
| Q |
10 |
catcatcatcgatcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagaccgcaatgagacgtacacactccaagcgtcc |
109 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||| | |||||| ||||||||||||| ||| ||||||| || |||||||||||| |||||||||||| |
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| T |
52421885 |
catcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaagaccacagtgagacgtacacgctccaagcgtcc |
52421984 |
T |
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| Q |
110 |
atgtcatg-aacctgcagcttcc-tcgttcaaccatgcaactcatttctccca--ttctctttcataggggagaatatgcagaatagtattatctacaat |
205 |
Q |
| |
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| ||| || ||||| ||||| || || |||||||||||||||||||||| ||| | |||||| ||||||||||||||||| ||||| |||| | ||| |
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| T |
52421985 |
acgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttcttccacttcctcttttgtaggggagaatatgcaggatagtgttatttccaac |
52422084 |
T |
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| Q |
206 |
aaggcggtgtcttcagaaaactttcttga--ctcaaattgcggtcaagaaacgaaagttttcttc--atgagtccnnnnnnnnnnnnnnnncaaaggcac |
301 |
Q |
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|||| | |||| ||||||| |||| ||| |||||||||| | ||||||| |||| ||||||| |||||| ||||||| | |
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| T |
52422085 |
aagggagcgtctacagaaaaatttcctgactctcaaattgcagcaaagaaacaaaagctttcttctggagagtccaagaagaacaagaaaacaaaggcgc |
52422184 |
T |
|
| Q |
302 |
cgcttattgcttctctaggagaccataatgctttggtacttgtgaggaaatgtacacattgtgaggcgacgaagattccacaatggaggatagggtcaga |
401 |
Q |
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| ||| ||||| |||| ||||||||||||||||| |||||| || |||| || ||||||||||||||||||| |||||||||||||| |||| |||| |
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| T |
52422185 |
cacttcttgctgctct---agaccataatgctttgggacttgtccggcaatgcacgcattgtgaggcgacgaagactccacaatggaggacagggccaga |
52422281 |
T |
|
| Q |
402 |
ggggcc |
407 |
Q |
| |
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|||||| |
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| T |
52422282 |
ggggcc |
52422287 |
T |
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