View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3657_high_1 (Length: 514)

Name: NF3657_high_1
Description: NF3657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3657_high_1
NF3657_high_1
[»] chr6 (19 HSPs)
chr6 (1-236)||(31565162-31565397)
chr6 (301-495)||(33414524-33414718)
chr6 (70-236)||(33414293-33414459)
chr6 (368-500)||(31564985-31565117)
chr6 (301-452)||(33269497-33269648)
chr6 (80-236)||(33383760-33383916)
chr6 (301-472)||(33383981-33384156)
chr6 (80-211)||(33351400-33351530)
chr6 (126-236)||(33292802-33292912)
chr6 (301-495)||(33395008-33395204)
chr6 (338-492)||(33258187-33258343)
chr6 (94-197)||(33258067-33258170)
chr6 (312-402)||(33292988-33293078)
chr6 (160-232)||(33269355-33269427)
chr6 (395-491)||(33278972-33279068)
chr6 (398-495)||(33280358-33280455)
chr6 (170-210)||(31567428-31567468)
chr6 (11-54)||(33414211-33414254)
chr6 (11-66)||(33351305-33351363)
[»] chr2 (4 HSPs)
chr2 (70-236)||(17445747-17445910)
chr2 (344-495)||(17447831-17447982)
chr2 (301-373)||(17445607-17445679)
chr2 (11-52)||(17445951-17445992)
[»] scaffold0428 (4 HSPs)
scaffold0428 (338-492)||(2308-2464)
scaffold0428 (94-197)||(2188-2291)
scaffold0428 (395-491)||(15185-15281)
scaffold0428 (398-495)||(13798-13895)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31565397 - 31565162
Alignment:
Q  1 actctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565397 actctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgc 31565298  T
Q  101 cgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaa 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565297 cgcacattaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaa 31565198  T
Q  201 gctctcctaatctctttgagattcttccctcaacaa 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  31565197 gctctcctaatctctttgagattcttccctcaacaa 31565162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 301 - 495
Target Start/End: Original strand, 33414524 - 33414718
Alignment:
Q  301 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 400  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  33414524 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaat 33414623  T
Q  401 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagc 495  Q
    ||||||||||| || | ||||||||||||||| ||||||||||||||||||| |||  ||| |||||||||||||||| ||||||||||||||||    
T  33414624 ttctcacttctgccaacaaagtccgtttcacagttcacttcaattagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagc 33414718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 33414293 - 33414459
Alignment:
Q  70 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 169  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  33414293 tgtttctccgagagtgaaccgaacaaaacgccgcactttaatgttctctccaatagcagctatactttgcctcaccaagtctttcactacaacactgtca 33414392  T
Q  170 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 236  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  33414393 tccttaataaaaggctgctctagaagagcaagctctcctaacctctttgagattcttccctcgacaa 33414459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 368 - 500
Target Start/End: Complemental strand, 31565117 - 31564985
Alignment:
Q  368 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 467  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  468 gaatgtatgtagcgattcttccttcagcaactc 500  Q
    ||||||||||| |||||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactc 31564985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 301 - 452
Target Start/End: Original strand, 33269497 - 33269648
Alignment:
Q  301 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 400  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  33269497 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaat 33269596  T
Q  401 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacac 452  Q
    ||||||||||| || | |||||| |||||||| |||||||||||||||||||    
T  33269597 ttctcacttctgccaacaaagtcggtttcacagttcacttcaattagaacac 33269648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 33383760 - 33383916
Alignment:
Q  80 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 179  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  33383760 agagtgaaccgaacaaaacgcccagctttaatgttctcgccaatggcagctatactttgcctcaccaagtctttcactgaaacactgtcatccttaatga 33383859  T
Q  180 aaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 236  Q
    ||||||||| || |||||| || |||  ||| |||||||||||||||||||||||||    
T  33383860 aaggctgctttataagagcgagatctggtaacctctttgagattcttccctcaacaa 33383916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 301 - 472
Target Start/End: Original strand, 33383981 - 33384156
Alignment:
Q  301 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagca----gcaacttgcattgcaagatcatgaacaaactcctt 396  Q
    |||||||||| |||||| | |||||||||||| ||||||||||||||||| ||||||||||    || ||||||||||||||||||| ||| ||||||||    
T  33383981 cttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaagcaagcagccacttgcattgcaagatcatcaaccaactcctt 33384080  T
Q  397 gaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatg 472  Q
     | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |||||||||| |||||||    
T  33384081 aattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatgtgtgaatagtgaatg 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 33351400 - 33351530
Alignment:
Q  80 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 179  Q
    |||||||||||||||||||||||| |  |||||||||| |||||  |||||||||||||||||||||||||||| |||| ||||||||| |||||||| |    
T  33351400 agagtgaaccgaacaaaacgccgcgctttaatgttctctccaataccagctatactttgcctcaccaagtctttcactacaacactgtcgtccttaat-a 33351498  T
Q  180 aaggctgctctagaagagcaagctctcctaat 211  Q
    |||| ||| |||||||||||||||||||||||    
T  33351499 aaggatgccctagaagagcaagctctcctaat 33351530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 33292802 - 33292912
Alignment:
Q  126 cagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattct 225  Q
    ||||||||||||||||| |||||||||| |   ||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||    
T  33292802 cagctatactttgcctctccaagtctttcaaagaaacactgtcatccttaatgaaaggctgctctataagagaaagccctcctaacctctttgagattct 33292901  T
Q  226 tccctcaacaa 236  Q
    |||||||||||    
T  33292902 tccctcaacaa 33292912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 301 - 495
Target Start/End: Original strand, 33395008 - 33395204
Alignment:
Q  301 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 400  Q
    ||||||| || |||||| | ||||| |||||||||||||||||||||||||||||||||||||   |||||||| |||||||  ||| ||||||||||||    
T  33395008 cttcgtcgcaatggtttcaagaataccttcaatagatacaaactgaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaat 33395107  T
Q  401 ttctcacttc--taccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagc 495  Q
     | |||||||  | || | |||||| |||||||| ||||||||||| ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||    
T  33395108 ctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagc 33395204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 338 - 492
Target Start/End: Original strand, 33258187 - 33258343
Alignment:
Q  338 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 436  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  33258187 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 33258286  T
Q  437 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttc 492  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||    
T  33258287 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttc 33258343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 33258067 - 33258170
Alignment:
Q  94 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 193  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  33258067 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 33258166  T
Q  194 agag 197  Q
    ||||    
T  33258167 agag 33258170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 312 - 402
Target Start/End: Original strand, 33292988 - 33293078
Alignment:
Q  312 tggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaattt 402  Q
    |||||||  |||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33292988 tggttttgagaatatcttcaatagatacaaactgaacctgaagaatagcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 33269355 - 33269427
Alignment:
Q  160 aacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctca 232  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  33269355 aacactgtcatccttaataaaaggctactctagaagagcaagctctcctaacctctttgagatttttccctca 33269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 395 - 491
Target Start/End: Original strand, 33278972 - 33279068
Alignment:
Q  395 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 491  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 33279068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 495
Target Start/End: Original strand, 33280358 - 33280455
Alignment:
Q  398 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagc 495  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||    
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagc 33280455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 31567468 - 31567428
Alignment:
Q  170 tccttaatgaaaggctgctctagaagagcaagctctcctaa 210  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31567468 tccttaatgaaaggctgctctagaagagaaagctctcctaa 31567428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 33414211 - 33414254
Alignment:
Q  11 atacttcttcctatgaaaatgcaacaaatacttttcttgaaaac 54  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||    
T  33414211 atacttcttcctatgaaaatgcaacgattacttctcttgaaaac 33414254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 33351305 - 33351363
Alignment:
Q  11 atacttcttcctatgaaaatgca---acaaatacttttcttgaaaactttttaagctat 66  Q
    |||||||||||||||||||||||   |||||||||| |||||||| | || ||||||||    
T  33351305 atacttcttcctatgaaaatgcaaagacaaatacttgtcttgaaagcgttgtaagctat 33351363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 17445910 - 17445747
Alignment:
Q  70 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 169  Q
    |||||||||  ||||||||| |||||||||||||||  |||    ||| ||||| ||||||||||||||||||||||| | ||| ||| |||| ||||||    
T  17445910 tgtttctccgggagtgaacctaacaaaacgccgcactttaaa---ctctccaatagcagctatactttgcctcaccaaatatttcactgaaacgctgtca 17445814  T
Q  170 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  17445813 tccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctcgacaa 17445747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 344 - 495
Target Start/End: Complemental strand, 17447982 - 17447831
Alignment:
Q  344 tgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 443  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| |||||    
T  17447982 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaa 17447883  T
Q  444 ttagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagc 495  Q
    ||||| |||  ||| ||| |||||||||||||||| ||||||||||||||||    
T  17447882 ttagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagc 17447831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 17445679 - 17445607
Alignment:
Q  301 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcatt 373  Q
    |||| ||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  17445679 cttcttcacaatggtttcgggaatatcttcaatagatacaaactgaacatgtggacaagcatcaacttgcatt 17445607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 17445992 - 17445951
Alignment:
Q  11 atacttcttcctatgaaaatgcaacaaatacttttcttgaaa 52  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  17445992 atacttcttcctatgaaaatgcaacaaatacttgtcttgaaa 17445951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 338 - 492
Target Start/End: Original strand, 2308 - 2464
Alignment:
Q  338 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 436  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  2308 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 2407  T
Q  437 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttc 492  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||    
T  2408 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttc 2464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 2188 - 2291
Alignment:
Q  94 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 193  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  2188 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 2287  T
Q  194 agag 197  Q
    ||||    
T  2288 agag 2291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 395 - 491
Target Start/End: Complemental strand, 15281 - 15185
Alignment:
Q  395 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 491  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 15185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 495
Target Start/End: Complemental strand, 13895 - 13798
Alignment:
Q  398 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagc 495  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||    
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagc 13798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University