View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_high_13 (Length: 304)
Name: NF3658_high_13
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 40916239 - 40915965
Alignment:
| Q |
13 |
aatatcaagatgctgctggagtggaagaaggtgagtttgatgaagatgatgaagaggaaattgcctagttgcaatgactttgacacaaacattatttaag |
112 |
Q |
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| T |
40916239 |
aatatcaagatgctgctggagtggaagaaggtgagtttgatgaagatgatgaagaggaaattgcctagttgcaatgactttgacacaaacattatttaag |
40916140 |
T |
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| Q |
113 |
gttctttttggatcattcatgtcatggcaaattaacacatatcataagtttgtttggtnnnnnnnnnnnnntacacatatata-ttggtaatggcatggt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
40916139 |
gttctttttggatcattcatgtcatggcaaattaacacatatcataagtttgtttggt----tgtgtgtgctacacatatatatttggtaatggcatggt |
40916044 |
T |
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| Q |
212 |
gaaaaaagaaggtaaagaatgtgtgtacatgaataatttactcatatatattatgagttggcttgcaaatgtgaaaagt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40916043 |
gaaaaaagaaggtaaagaatgtgtgtacatgaataatttactcatatatattatgagttggcttgcaaatgtgaaaagt |
40915965 |
T |
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