View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_high_15 (Length: 289)
Name: NF3658_high_15
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_high_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 6264742 - 6265006
Alignment:
| Q |
18 |
acataggaggcaccaaagaataaggaacgagaaaatagtattgtataaaggatactcatcccatccactaccaaaggagccttcaattgtattttactct |
117 |
Q |
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| T |
6264742 |
acataggaggcaccaaagaataaggaacgagaaaatagtattgtataaaggatactcatcccatccactaccaaaggagccttcaattgtattttactct |
6264841 |
T |
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| Q |
118 |
agttttaagaaccttagcctccatctctcatcaccatctcattctcatttcagttccttcctttcaaaatcattgaagctctatgtttgaagaacaagta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6264842 |
agttttaagaaccttagcctccatctctcatcaccatctcattctcatttcagttccttcctttcaaaatcattgaagctctatgtttgaagaacaagta |
6264941 |
T |
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| Q |
218 |
tcatctctcctacaaccgtatgtgactactttgcactttgcacctttgtaatttatgtcttcaacttctgtt |
289 |
Q |
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| T |
6264942 |
tcatctctcctacaaccgtatgtgact-------actttgcacctttgtaatttatgtcttaaacttctgtt |
6265006 |
T |
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