View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3658_high_17 (Length: 250)

Name: NF3658_high_17
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3658_high_17
NF3658_high_17
[»] chr5 (4 HSPs)
chr5 (1-234)||(3252105-3252340)
chr5 (15-89)||(43442235-43442311)
chr5 (1-65)||(16773832-16773896)
chr5 (15-65)||(7918456-7918506)
[»] chr2 (4 HSPs)
chr2 (7-89)||(9318036-9318119)
chr2 (15-89)||(44157606-44157682)
chr2 (1-65)||(13803520-13803584)
chr2 (1-58)||(11251112-11251169)
[»] chr3 (5 HSPs)
chr3 (1-65)||(49494133-49494197)
chr3 (12-65)||(27093348-27093401)
chr3 (15-65)||(46518667-46518717)
chr3 (29-65)||(16354879-16354915)
chr3 (1-61)||(17108889-17108949)
[»] chr7 (5 HSPs)
chr7 (6-57)||(18363726-18363777)
chr7 (17-62)||(13106772-13106817)
chr7 (3-89)||(15137580-15137668)
chr7 (1-65)||(22760888-22760952)
chr7 (1-65)||(26459397-26459461)
[»] chr4 (4 HSPs)
chr4 (6-65)||(19680775-19680834)
chr4 (29-65)||(4249230-4249266)
chr4 (1-65)||(21404808-21404872)
chr4 (1-65)||(37109338-37109402)
[»] chr8 (3 HSPs)
chr8 (11-65)||(13129703-13129757)
chr8 (1-65)||(18540323-18540387)
chr8 (1-57)||(44780109-44780165)
[»] chr1 (2 HSPs)
chr1 (15-61)||(4566587-4566633)
chr1 (1-58)||(3265949-3266006)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3252340 - 3252105
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa--cggatgggctaatttagtttcttcnnnnnnnng 98  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||||||||        |    
T  3252340 attgacttgagacttgggagtgcactcttcctcaggctctcaggttcgattctctctgatgccaattcggatgggctaatttagtttcttcaaaaaaaag 3252241  T
Q  99 aatatacctttcttttcttggttatatgtttgatctgctgtactgtataaaatgttgtgcagatactttccagtaaaggagatattggtgttttccgcaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3252240 aatatacctttcttttcttggttatatgtttgatctgctgtactgtataaaatgttgtgcagatactttccagtaaaggagatattggtgttttccgcaa 3252141  T
Q  199 cattaaacaggaaaccacagtgccaatggtgagttg 234  Q
    ||||||||||||||||||||||||||||||||||||    
T  3252140 cattaaacaggaaaccacagtgccaatggtgagttg 3252105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 43442235 - 43442311
Alignment:
Q  15 tgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa--cggatgggctaatttagtttcttc 89  Q
    ||||||||  ||| |||||| ||||||||||| ||||||||||| || |||   |||||||||||||||||||||||    
T  43442235 tgggagtgtgctcctcctcaaggtctcaggttcgattctctctgttgtcaatttggatgggctaatttagtttcttc 43442311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 16773832 - 16773896
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    ||||||||| ||| ||||||||  ||| |||||  ||||||||||| ||||||||||||||||||    
T  16773832 attgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaa 16773896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 7918506 - 7918456
Alignment:
Q  15 tgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    ||||||||||||| |||||| ||||| ||||| ||||||||||| ||||||    
T  7918506 tgggagtgcactcctcctcaaggtcttaggttcgattctctctggtgccaa 7918456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 9318119 - 9318036
Alignment:
Q  7 ttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa--cggatgggctaatttagtttcttc 89  Q
    |||||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||||  ||| ||||||||||||||||||||    
T  9318119 ttgagaattcggagtgcacccttcctcagg-tctcaggttcgattctctctgatgccaattcgggtgggctaatttagtttcttc 9318036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 44157606 - 44157682
Alignment:
Q  15 tgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa--cggatgggctaatttagtttcttc 89  Q
    ||||| |||||||||||||| |||||||  || |||||| |||||||||||  ||||||||||||||||||||||||    
T  44157606 tgggaatgcactcttcctcaaggtctcatattcgattctttctgatgccaattcggatgggctaatttagtttcttc 44157682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 13803520 - 13803584
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    |||| |||||||||| ||||||  ||| |||||| ||||||||||| |||| |||||||||||||    
T  13803520 attggcttgagacttaggagtgtgctcctcctcaaggtctcaggttcgattatctctgatgccaa 13803584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11251112 - 11251169
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctg 58  Q
    |||| |||| ||||||| ||||  ||| |||||| |||||||||||||||||||||||    
T  11251112 attggcttgggacttggaagtgtgctcctcctcaaggtctcaggtttgattctctctg 11251169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 49494197 - 49494133
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    |||||||||| | |||||||||  |||||||||  ||||||||||||||||||| ||||||||||    
T  49494197 attgacttgaaatttgggagtgtgctcttcctcgaggtctcaggtttgattctccctgatgccaa 49494133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 27093401 - 27093348
Alignment:
Q  12 acttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    |||||||||||  ||| |||||| ||||||||||||||||||||||| ||||||    
T  27093401 acttgggagtgtgctcctcctcaaggtctcaggtttgattctctctggtgccaa 27093348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 46518667 - 46518717
Alignment:
Q  15 tgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    ||||||||  ||| |||||| ||| ||||||||||||||||||||||||||    
T  46518667 tgggagtgtgctcctcctcaaggtttcaggtttgattctctctgatgccaa 46518717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 16354915 - 16354879
Alignment:
Q  29 tcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  16354915 tcctcagggtctcaggttcgattctctctggtgccaa 16354879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17108949 - 17108889
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatg 61  Q
    ||||||| ||||  ||||||||  ||| |||||| ||||||||||||||||||| ||||||    
T  17108949 attgactggagatgtgggagtgtgctcctcctcaaggtctcaggtttgattctccctgatg 17108889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 18363726 - 18363777
Alignment:
Q  6 cttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctct 57  Q
    ||||||| |||||||||  ||| |||||| ||||||||||||||||||||||    
T  18363726 cttgagatttgggagtgtgctcctcctcaaggtctcaggtttgattctctct 18363777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 13106817 - 13106772
Alignment:
Q  17 ggagtgcactcttcctcagggtctcaggtttgattctctctgatgc 62  Q
    |||||| |||| |||||| ||||||||||| |||||||||||||||    
T  13106817 ggagtgtactcctcctcaaggtctcaggttcgattctctctgatgc 13106772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 15137580 - 15137668
Alignment:
Q  3 tgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa--cggatgggctaatttagtttcttc 89  Q
    ||||||| || || ||||||  ||| |||||| ||||||||||| ||||||||||| || |||   || ||||||||||||||||||||    
T  15137580 tgacttgggatttaggagtgtgctcctcctcaaggtctcaggttagattctctctggtgtcaatttgggtgggctaatttagtttcttc 15137668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22760888 - 22760952
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    ||||||||| ||| ||||||||  ||| |||||| ||||||||||| ||||||| | ||||||||    
T  22760888 attgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccccgatgccaa 22760952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26459461 - 26459397
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    |||| |||| ||| ||||||||  ||| |||||| ||||||||||| ||||||||||| ||||||    
T  26459461 attggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaa 26459397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 19680834 - 19680775
Alignment:
Q  6 cttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    |||| ||||||||||||  |||||||||| ||||| ||||| ||||||||||| ||||||    
T  19680834 cttgggacttgggagtgtgctcttcctcaaggtcttaggttcgattctctctggtgccaa 19680775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 4249230 - 4249266
Alignment:
Q  29 tcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  4249230 tcctcaaggtctcaggtttgattctctctggtgccaa 4249266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21404872 - 21404808
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    ||||||||||||| || ||||   ||| |||||| ||||||| ||||||||||||||||| ||||    
T  21404872 attgacttgagacctgagagtatgctcctcctcaaggtctcatgtttgattctctctgataccaa 21404808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37109402 - 37109338
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    |||| |||| ||| ||||||||  ||| |||||| ||||||||||| ||||||||||| ||||||    
T  37109402 attggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaa 37109338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 13129703 - 13129757
Alignment:
Q  11 gacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    ||||||||||||| ||| |||||| ||| ||||||| ||||||||||| ||||||    
T  13129703 gacttgggagtgcgctcctcctcaaggtttcaggttcgattctctctggtgccaa 13129757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18540323 - 18540387
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctgatgccaa 65  Q
    |||| |||| ||| |||||||| |||  |||||| ||||||||||| ||||||||||| ||||||    
T  18540323 attggcttgggacctgggagtgtacttctcctcaaggtctcaggttcgattctctctggtgccaa 18540387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 44780165 - 44780109
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctct 57  Q
    |||| |||| ||||||||||||  ||| |||||| ||||||||||||||||| ||||    
T  44780165 attggcttgggacttgggagtgtgctcctcctcaaggtctcaggtttgattccctct 44780109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 4566587 - 4566633
Alignment:
Q  15 tgggagtgcactcttcctcagggtctcaggtttgattctctctgatg 61  Q
    ||||||||  ||| |||||||||||||||||| ||||||||||||||    
T  4566587 tgggagtgtgctcctcctcagggtctcaggttcgattctctctgatg 4566633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3265949 - 3266006
Alignment:
Q  1 attgacttgagacttgggagtgcactcttcctcagggtctcaggtttgattctctctg 58  Q
    |||||||||  |||||||||||  ||| |||||| ||||||||||| |||||||||||    
T  3265949 attgacttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattctctctg 3266006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University