View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_high_2 (Length: 616)
Name: NF3658_high_2
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 11 - 601
Target Start/End: Original strand, 30993468 - 30994058
Alignment:
| Q |
11 |
cataggtaaatgattatgctggatttcggagtaggatgttgttgcggtggagatttgacatttagttgattgaaacattttcagctccaaaatatgatcc |
110 |
Q |
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| T |
30993468 |
cataggtaaatgattatgctggattccggagtaggatgttgttgcggtggagatttgatatttagttgattgaaacattttcagctccaaaatatgatcc |
30993567 |
T |
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| Q |
111 |
ctaattgtgttctcattccaactccattcgccatggcttatatattaagatcactcactaaagtggtacgaaaataatggtggccttggcgtgtatccac |
210 |
Q |
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| T |
30993568 |
ctaattgtgttctcattccaactccattcgccatggcttatatattaagatcactcactatagtggtacgaaaataatggtggccttggcgtgtatccac |
30993667 |
T |
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| Q |
211 |
atcattcacatgagttgcagaaaacattccatcttcttaattgtnnnnnnngattccatctcaatatgaactactctaccacttatttgacattgccaaa |
310 |
Q |
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| T |
30993668 |
atcattcacatgagttgcagaaaacattccatcttcttaattgtaaaaaaagattccatctcaatatgaactactctaccacttatttgacattgccaaa |
30993767 |
T |
|
| Q |
311 |
gtaatatacactacaattctgtagccaatagaagggtacatcaacaaatgatcgaactagtttaatgtacaataaatacctggttagccatatgaacaaa |
410 |
Q |
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| T |
30993768 |
gtaatatccactacaattctgtagccaatagaagggtacatcaacaaatgatcgaactagtttaatgtacaataaatacctggttagccatatgaacaaa |
30993867 |
T |
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| Q |
411 |
tgagtaaacaatttaagccaaagaatcacaatgagttcaaatttctacaagcctattaaacgtttgaagagtgcgagtgcaaagtcgagcatcaaccaaa |
510 |
Q |
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| T |
30993868 |
tgagtaaacaatttaagccaaagaatcacaacgagttcaaatttctacaagcctattaaacgtttgaagagtgcgagtgcaaagtcgagcatcaaccaaa |
30993967 |
T |
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| Q |
511 |
ctcggcagtggtaaacaatcttgagaatcaagcaacaaccttacttaaattcacattgtagcccagcatttataggaattgccagtcatct |
601 |
Q |
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| T |
30993968 |
ctcggcagtggtaaacaatcttgagaatcaagcaacaaccttacttaaattcacattgtagcccagcatttataggaattgccagtcatct |
30994058 |
T |
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