View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_high_5 (Length: 541)
Name: NF3658_high_5
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 1989464 - 1989975
Alignment:
| Q |
18 |
taaacatcaacctacatatggttaattggttttgtgacattagattttcatatatgtgatctatgatatgtcacattccaaacccactttagaaatggaa |
117 |
Q |
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| T |
1989464 |
taaacatca-cctacatatggttaattggttttgtgacattagattttcatatatgtgatctatgatatgtcacattccaaacccactttagaaatggaa |
1989562 |
T |
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| Q |
118 |
tagcatacactatagtcaatatcatcactcctcacatggtttgtcttttcctactttggggtttatgatatatgtttgaaagatttgtttgtgtattgag |
217 |
Q |
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| T |
1989563 |
tagcatacactatagtcaatatcatcactcctcacatggtttgtcttttcctactttggtgtttatgatatatgtttgaaagatttgtttgtgtattgag |
1989662 |
T |
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| Q |
218 |
cttttgataaaacccataagaattagaaaccgtccaaaccacacgggtcttagatgttgatggaggaaagtgattgattatttatgttgttgttttcttt |
317 |
Q |
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| T |
1989663 |
cttttgataaaacccataagaattagaaaccgtccaaaccacacgggtcttagatgttgatggaggaaagtgattgattatttatgttgttgttttcttt |
1989762 |
T |
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| Q |
318 |
tgagatgtttatttatataattttctactatttgtgactgttgaaagcaacatttgggaacgtatctaaaacactgttctctatttctttattttgatta |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1989763 |
tgagatgtttatttatataattttctactatttgtgactgttgaaagcaacatttgggaacgtatctaaaacactgtcctctatttctttattttgatta |
1989862 |
T |
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| Q |
418 |
agacatgctagtagtaattgttttttatttagcttaaaataataattatttaagaggagtggacaagcattacatgttctttcgtgaggttaggggcagc |
517 |
Q |
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| T |
1989863 |
agacatgctagtagtaattgttttttatttagctttaaataataattatttaagaggagtggacaagcattacatgttctttcgtgaggttaggggcagc |
1989962 |
T |
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| Q |
518 |
tgaggtgatgatg |
530 |
Q |
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| T |
1989963 |
tgaggtgatgatg |
1989975 |
T |
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