View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_high_9 (Length: 343)
Name: NF3658_high_9
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 24676848 - 24676983
Alignment:
| Q |
190 |
ctctttgccctaaaagtcgttgacaaaacctccatccacgccaaacttgacgccgaacgccgcgcccgatgggaaatccaagtcctctccaccctctccc |
289 |
Q |
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| T |
24676848 |
ctctttgccctaaaagtcgttgacaaaacctccatccacgccaaacttgacgccgaacgccgcgcccgatgggaaatccaagtcctctccaccctctccc |
24676947 |
T |
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| Q |
290 |
accctttcctcccttcaatccttggtacatatgaat |
325 |
Q |
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| T |
24676948 |
accctttcctcccttcaatccttggtacatatgaat |
24676983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 24676677 - 24676807
Alignment:
| Q |
19 |
cattccctcccctcctcccattccattgaaactaaaatggaaccagctccaccaccattggagctagaccttgacaatcttaaagcactcaaaatcctag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24676677 |
cattccctcccctcctcccattccattgaaactaaaatggaaccagctccaccaccattggagctagaccttgacaatcttaaagcactcaaaatcctag |
24676776 |
T |
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| Q |
119 |
gaaaaggtgccatgggcaccgtcttcctcgt |
149 |
Q |
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| T |
24676777 |
gaaaaggtgccatgggcaccgtcttcctcgt |
24676807 |
T |
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