View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_low_1 (Length: 673)
Name: NF3658_low_1
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 139 - 657
Target Start/End: Original strand, 54022025 - 54022535
Alignment:
| Q |
139 |
tcaataaagttgtaacagaacatgtactaactaacattctttgggtctcaataattgattccccttttattcaaaaatcatcacatacatacaaaaaatg |
238 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54022025 |
tcaaaaaagttgtaacagaacatgtacta----acattctttgggtctcaatagttgattccccttttattcaaaaatcatcacatacatacaaaaaatg |
54022120 |
T |
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| Q |
239 |
aactttattacattcttaccccatcaagcaaaatgtttgaagacttgaagtctctatatataactgatttttctgaagtgtgtaagaaacccaaacctct |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54022121 |
aactttattacattcttaccccatcaagcaaaatgtttgaagacttgaagtctctatatataactgatttttctgaagtgtgtaagaaacccaaacctct |
54022220 |
T |
|
| Q |
339 |
agcagctcctatggctatcttcaaccttatttcccaagacagtggttcagggcctgccaaacaacacaacattcattcattaacttaatactaatacata |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54022221 |
agcagctcctatggctatcttcaaccttatttcccaagacagtggttcagggcctgccaaacaacaca----ccattcattaacttaatactaatacata |
54022316 |
T |
|
| Q |
439 |
ctattgattaattaatttcgtacttctgaagaggtggctttccaagctgcccttttgcatgtactcgtaaaccagcaggaattgattttcctcccaacag |
538 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54022317 |
ctattgattaattaatttcgtacttctgaagaggtggctttccaagctgcccttttgcatgtactcgtaaaccagcaggaattgattttcctcccaacag |
54022416 |
T |
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| Q |
539 |
tagccaagtagtttaacaagattcggatgagagaacttccccaaaaagtccacttcactctgcacccatgcacataccattataaaatcaaaccaaatta |
638 |
Q |
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| T |
54022417 |
tagccaagtagtttaacaagattcggatgagagaacttccccaaaaagtccacttcactctgcacccatgcacataccgttataaaatcaaaccaaatta |
54022516 |
T |
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| Q |
639 |
aacttaattgtgaatacac |
657 |
Q |
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| T |
54022517 |
aagttaattgtgaatacac |
54022535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 54021924 - 54022031
Alignment:
| Q |
11 |
cataggtacccatgatccgtgtggttacatgtgatctaccgttgacaggtccaagctttgccaatccaaagtcagacaactttgcattgaaatcctgtta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54021924 |
cataggtacccatgatccgtgtggttacatgtgatctaccgttgacaggtccaagctttgccaatccaaagtcagacaactttgcattgaaatcctgtta |
54022023 |
T |
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| Q |
111 |
ttcaaaaa |
118 |
Q |
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|||||||| |
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| T |
54022024 |
ttcaaaaa |
54022031 |
T |
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