View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_low_10 (Length: 328)
Name: NF3658_low_10
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 8958065 - 8957761
Alignment:
| Q |
9 |
agcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgtt |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8958065 |
agcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgtt |
8957966 |
T |
|
| Q |
109 |
ttcttgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatgg |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8957965 |
ttcatgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatgg |
8957866 |
T |
|
| Q |
209 |
atgcaaaactattttctgaaaagtatatgtttgtaacatttgtaataaaaacagccccaagaacttttgcttcatccaaattatcgacttgataaaaaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8957865 |
atgcaaaactattttctgaaaagtatatgtttgtaacatttgtaataaaaacagccccaagaacttttgcttcatccaaattatcgacttgataaaaaag |
8957766 |
T |
|
| Q |
309 |
gctag |
313 |
Q |
| |
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||||| |
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|
| T |
8957765 |
gctag |
8957761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 8946009 - 8946129
Alignment:
| Q |
16 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
115 |
Q |
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|||||||||||||| | |||||||||||||||||| || ||||| |||||| |||| |||||| ||||||||||||| ||||||||| || | ||||| |
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| T |
8946009 |
atgtcaggtttcaagacatatggacaactatttgatggtcctctcgaactagaagagtaaacaccaggtgctggtttagttccaaaaattgataacttga |
8946108 |
T |
|
| Q |
116 |
aagacatgcttgcttttgaag |
136 |
Q |
| |
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||||||| ||||| |||||| |
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| T |
8946109 |
aagacatatttgctattgaag |
8946129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 8963072 - 8962945
Alignment:
| Q |
16 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
115 |
Q |
| |
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|||||||||||||| | |||||||||||| ||||| |||||||| ||||||||| || || |||||| |||||||| |||||| ||| |||||| |
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| T |
8963072 |
atgtcaggtttcaacacatatggacaactctttgatggccctctagaactataaaaatccaccctaggtactggtttagcaccaaaagatgtaatcttga |
8962973 |
T |
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| Q |
116 |
aagacatgcttgcttttgaagtagagtt |
143 |
Q |
| |
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||||||| || || ||||| ||||||| |
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| T |
8962972 |
aagacattttttctattgaactagagtt |
8962945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 34962792 - 34963066
Alignment:
| Q |
16 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
115 |
Q |
| |
|
|||||||||||||| | | |||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
34962792 |
atgtcaggtttcaacacaaatggacaactatatgatggccctcttgaactatatgaatcaacactaggtgctggtttagttccaaaaactgttttcatga |
34962891 |
T |
|
| Q |
116 |
aagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatggatgcaaa |
215 |
Q |
| |
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||||||||||||| |||||| |||||||| ||||||||||||||||||||| | ||| ||||| ||||||| ||||| ||||| |||||| |
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| T |
34962892 |
aagacatgcttgcaattgaag---------tagagttactactcttgatgtaagctttgacaatttcaccatttattggattaacaaggatggttgcaaa |
34962982 |
T |
|
| Q |
216 |
actattttctgaaaagtatatgtttgtaacatttgtaataaaaacagccccaagaacttttgcttcatccaaattatcgacttg |
299 |
Q |
| |
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|||||||| |||| || |||||| || ||||||| ||| |||||||| |||| |||||||||| ||| |||||||| |||||| |
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| T |
34962983 |
actattttgtgaatagaatatgtctgagacatttgaaatcaaaacagctccaaaaacttttgctgcattcaaattattgacttg |
34963066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 21687165 - 21687374
Alignment:
| Q |
9 |
agcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgtt |
108 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||||||||||| || || ||||| |||||| || |||||||||| || ||||| || ||| ||||| |
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| T |
21687165 |
agcagtgatgtcaggtttcaacacatatggacaactatttgatggtccccttgagctataaaaatccacactaggtgttgatttaacaccgaaagctgtt |
21687264 |
T |
|
| Q |
109 |
ttcttgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatgg |
208 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||| | |||||||||| |||||||||||||||||| || | ||||||||| | ||||| || |||||||| |
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| T |
21687265 |
ttcttgaaagacatgtttgctattgaactagcg---ttagagttatgactcttgatgtaagctttcacaatttctccatttactggattaataatgatgg |
21687361 |
T |
|
| Q |
209 |
atgcaaaactatt |
221 |
Q |
| |
|
||| |||||||| |
|
|
| T |
21687362 |
atgggaaactatt |
21687374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 19375879 - 19375998
Alignment:
| Q |
9 |
agcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgtt |
108 |
Q |
| |
|
||||| |||||| |||||||| | | |||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||| |||| |
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| T |
19375879 |
agcagtgatgtcgggtttcaacacaaatggacaattatttgaaggccctcttgaactataaagatcaacactaggtgttggtttaacaccaaaaattgtt |
19375978 |
T |
|
| Q |
109 |
ttcttgaaagacatgcttgc |
128 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
19375979 |
ttcttgaaagacatgcttgc |
19375998 |
T |
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