View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3658_low_16 (Length: 270)
Name: NF3658_low_16
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 55695280 - 55695047
Alignment:
| Q |
28 |
tgctgattctgtttcagtagtttctttagcctcttcagctgatacttcctctttcacttcgaccttttcaggttccgcgttctctacctctggcttggct |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
55695280 |
tgctgattctgtttcagtagtttctttagcctcttcagctgatacttcctctttcacttcgactttttcaggttccgggttctctacctctggcttggct |
55695181 |
T |
|
| Q |
128 |
tcctcagttacttgtgtactctcagcttcaactggaacttcagtttctcctttctccactgctactacttcttcggtggtggccggttctgaagtgggaa |
227 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
55695180 |
tcctgggttacttgtgtactctcagcttcaacgggaacttcagtttcttcattctccactgctactacttcttcggtggtggctggttctgaagcaggaa |
55695081 |
T |
|
| Q |
228 |
cctcagagccc---ggtgttgtttcctcgacctt |
258 |
Q |
| |
|
|||| ||| || |||||||||||||||||||| |
|
|
| T |
55695080 |
cctcggaggccggtggtgttgtttcctcgacctt |
55695047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 55695360 - 55695284
Alignment:
| Q |
20 |
gctatggctgctgattctgtttcagtagtttctttagcctcttcagctgatacttcctctttcacttcgaccttttc |
96 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
55695360 |
gctattgctgctgattctatttcagtagtttctttagcctcttcagttgatacttcctcttttgcttcgactttttc |
55695284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University