View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_low_19 (Length: 242)
Name: NF3658_low_19
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 13673314 - 13673540
Alignment:
| Q |
1 |
tatcagattttggactggcaaagtggcttccaaataattgggcacaccacgttgtttttcctatagaaggcacatttgggttagtattgcatctactttt |
100 |
Q |
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| T |
13673314 |
tatcagattttggactggcaaagtggcttccaaataattgggcacaccacgttgtttttcctatagaaggcacatttgggttagtattgcatctactttt |
13673413 |
T |
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| Q |
101 |
acttttgtgtannnnnnn-ctcattataaccattttctaagacattggatgtatcaatgtctgtttgtaggtatttggctccagagtactttatgcatgg |
199 |
Q |
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| T |
13673414 |
actctagtatattttttttctcattataaccattttctaagacattggatgtatcaatgtctgtttgtaggtatttggctccagagtactttatgcatgg |
13673513 |
T |
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| Q |
200 |
tgttgtggatgagaagacagatgtatt |
226 |
Q |
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| T |
13673514 |
tgttgtggatgagaagacagatgtatt |
13673540 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 28532460 - 28532520
Alignment:
| Q |
168 |
aggtatttggctccagagtactttatgcatggtgttgtggatgagaagacagatgtatttg |
228 |
Q |
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| T |
28532460 |
aggtatttggctccagagtatttcatgcatggacttgtggatgagaagactgatgtttttg |
28532520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 28532291 - 28532370
Alignment:
| Q |
3 |
tcagattttggactggcaaagtggcttccaaataattgggcacaccacgttgtttttcctatagaaggcacatttgggtt |
82 |
Q |
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| T |
28532291 |
tcagattttggattagctaagtggcttccggataaatgggcgcaccatgttgtattcccaatagaaggcacattcgggtt |
28532370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 53174285 - 53174220
Alignment:
| Q |
163 |
tttgtaggtatttggctccagagtactttatgcatggtgttgtggatgagaagacagatgtatttg |
228 |
Q |
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||||||| ||||||| ||||| |||| ||||||| |||||||||||||| ||||||||||||| |
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| T |
53174285 |
tttgtagacatttggcaccagaatactacttgcatggagttgtggatgagaaaacagatgtatttg |
53174220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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