View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_low_20 (Length: 240)
Name: NF3658_low_20
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10271660 - 10271883
Alignment:
| Q |
1 |
aggtgtcttgaattgagccgcagatgctcccaatccaacataatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttcaagggctcca |
100 |
Q |
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| T |
10271660 |
aggtgtcttgaattgagccgcagatgctcctaatccaacataatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttcaagggctcca |
10271759 |
T |
|
| Q |
101 |
atgcctttgactttcctagaactaacatagccaagatcaacaaaagacttgtccaagcatgtacaacattcatcaagcacatcatcacttgcttcgccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10271760 |
atgcctttgactttcctagaactaacatagccaagatcaacaaaagacttgtccaagcatgtacaacattcatcaagcacatcatcacttgcttcgccac |
10271859 |
T |
|
| Q |
201 |
tgatttcccagaagataacataat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
10271860 |
tgatttcccagaagataacataat |
10271883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10263488 - 10263709
Alignment:
| Q |
1 |
aggtgtcttgaattgagccgcagatgctcccaatccaacataatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttcaagggctcca |
100 |
Q |
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||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10263488 |
aggtgtcttgaattgagccgcggatgaacctaatccaacataatgctcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggctcca |
10263587 |
T |
|
| Q |
101 |
atgcctttgactttcctagaactaacatagccaagatcaacaaaagacttgtccaagcatgtacaacattcatcaagcacatcatcacttgcttcgccac |
200 |
Q |
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| T |
10263588 |
atgcctttgactttcctagaactaacatagccagcatcaacaaaagacttatccaaacatgtacaacattcataaagcacagcatcacttgcttcaccgc |
10263687 |
T |
|
| Q |
201 |
tgatttcccagaagataacata |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
10263688 |
tgatttcccagaagataacata |
10263709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 32 - 224
Target Start/End: Original strand, 10241548 - 10241740
Alignment:
| Q |
32 |
aatccaacataatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttcaagggctccaatgcctttgactttcctagaactaacatagc |
131 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| |
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| T |
10241548 |
aatccaacataatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggccgcaatacctttgacttttctagaactaacatagc |
10241647 |
T |
|
| Q |
132 |
caagatcaacaaaagacttgtccaagcatgtacaacattcatcaagcacatcatcacttgcttcgccactgatttcccagaagataacataat |
224 |
Q |
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| T |
10241648 |
cagcatcaacaaaagacttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttcccaaaaaataacataat |
10241740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10283148 - 10283369
Alignment:
| Q |
1 |
aggtgtcttgaattgagccgcagatgctcccaatccaacataatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttcaagggctcca |
100 |
Q |
| |
|
|||||||||||||||| | ||||||| || ||||||||||||||||||||||||||| |||||||||| | | ||||| |||||||||||||||| | |
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| T |
10283148 |
aggtgtcttgaattgactcacagatgcacctaatccaacataatgctcaagaatcttcatgaatgttcctctcctaacaactcggagttcaagggcttcg |
10283247 |
T |
|
| Q |
101 |
atgcctttgactttcctagaactaacatagccaagatcaacaaaagacttgtccaagcatgtacaacattcatcaagcacatcatcacttgcttcgccac |
200 |
Q |
| |
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|| ||||| || | ||||||| |||||| |||| |||| |||||| |||||| || || | ||||| ||| ||||||| ||||| |||||||||||| |
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| T |
10283248 |
atagctttggctcttctagaaccaacatatccaatatcagcaaaagtcttgtctaaacagctgcaacactcaccaagcacttcatcgcttgcttcgccat |
10283347 |
T |
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| Q |
201 |
tgatttcccagaagataacata |
222 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
10283348 |
tgatttcccaaaagataacata |
10283369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 13978996 - 13979045
Alignment:
| Q |
41 |
taatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttc |
90 |
Q |
| |
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||||| ||||||||||| |||||||||||||| | ||||| ||||||||| |
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| T |
13978996 |
taatgatcaagaatcttttggaatgttcctttcccaacaactcggagttc |
13979045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 222
Target Start/End: Complemental strand, 48369897 - 48369707
Alignment:
| Q |
32 |
aatccaacataatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttcaagggctccaatgcctttgactttcctagaactaacatagc |
131 |
Q |
| |
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||||||| ||||| ||||||||||| || ||||||||||| | ||||| ||| ||||| | ||||||||| | |||||||| | ||||||| |||| |
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| T |
48369897 |
aatccaaggtaatgatcaagaatcttttgaaatgttcctttcctaacaactcgaagttctaaggctccaatagcgttgactttacgagaactagtgtagc |
48369798 |
T |
|
| Q |
132 |
caagatcaacaaaagacttgtccaagcatgtacaacattcatcaagcacatcatcacttgcttcgccactgatttcccagaagataacata |
222 |
Q |
| |
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| ||| ||||||||||||||||| || | |||||||||| |||||| || ||||||||||| || |||||||||||||||| ||||| |
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| T |
48369797 |
ctgcatcgacaaaagacttgtccaaacagttgcaacattcatgaagcacttcttcacttgcttccccgttgatttcccagaagattacata |
48369707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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