View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_low_6 (Length: 433)
Name: NF3658_low_6
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 417
Target Start/End: Complemental strand, 41797431 - 41797017
Alignment:
| Q |
7 |
gggagtacaaagagaactacatcattaaaaatcttatttaaaaaactcattgagataaag-----tgaagaaaaaagagtgcagtgatggacaagaaaca |
101 |
Q |
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| T |
41797431 |
gggagtacaaagagatctacatcattaaaaatcttacttaaaaaactcattgagataaagccaagtgaagaaaaaagagtgcagtgatggacaagaaaca |
41797332 |
T |
|
| Q |
102 |
aatcaacaatactatatccggctcattaaatataagtatttaaaacactagaagaaattgtttattttttaaggnnnnnnnnt--attccttccaagtgg |
199 |
Q |
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| T |
41797331 |
aatcaacaatactatatccggctcattaaatataagtatttaaaacactagaagaaattttttattttttaaggaaaaaaaataaattcctcccaagtgg |
41797232 |
T |
|
| Q |
200 |
tcacgtcaannnnnnngaagaccaaaa-tactcggctagtgtnnnnnnnnnccataaaaataaattgggtgaactaaagtaatgagctttaactaaggtc |
298 |
Q |
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| T |
41797231 |
tcacgtcaa-----ttgaagaccaaaattactcaactagtat-aaaaaaaaccataaaaataaattggttgaaataaagtaatgagctttaactaaggtc |
41797138 |
T |
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| Q |
299 |
gaatagtgtaagagaaaccttatattaagcagagaagt-agtgtatttttaaat-aaaattaattaattcacttacaagaaagaaactcgatgctagcaa |
396 |
Q |
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| T |
41797137 |
gaatagtgtgagagaaaccttgtattaagtagagaagtaagtgtatttttaaatgaaaataaattaattcacttacaagaaagaaactcgatgctagcaa |
41797038 |
T |
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| Q |
397 |
agttgtctttttagttgtaat |
417 |
Q |
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| T |
41797037 |
agttgtctttttagttgtaat |
41797017 |
T |
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