View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_low_7 (Length: 390)
Name: NF3658_low_7
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 157 - 364
Target Start/End: Original strand, 34437156 - 34437363
Alignment:
| Q |
157 |
aaatgtaagttgtacttatagacgataaaatgtaagacaaattataaataaacacacgatgtcgcatatgatgtctatactttgatgtttaaataaaagt |
256 |
Q |
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| T |
34437156 |
aaatgtaagttgtacttatagacgataaaatgtaagacaaattataaataaacacacgatgtcgcatatgatgtctatactttgatgttcaaataaaagt |
34437255 |
T |
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| Q |
257 |
tgtattgattattatcatattctatcatcatcaagtcttttcctcactacttacttgagacaagaaccagcagtaacttgttcagtttcaaatgtagaaa |
356 |
Q |
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| T |
34437256 |
tgtattgattattatcatattctataatcatcaagtcttttcctcactacttacttgagacaagaaccagcagtaacttgttcagtttcaaatgtagaaa |
34437355 |
T |
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| Q |
357 |
gagtagca |
364 |
Q |
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| T |
34437356 |
gagtagca |
34437363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 34437100 - 34437137
Alignment:
| Q |
104 |
taattaaaaaaatgatttttgaacattaaaataccgtg |
141 |
Q |
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| T |
34437100 |
taattagagaaatgatttttgaacattaaaataccgtg |
34437137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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