View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3658_low_8 (Length: 362)
Name: NF3658_low_8
Description: NF3658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3658_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 352
Target Start/End: Complemental strand, 54775470 - 54775133
Alignment:
| Q |
15 |
cactcactcatatgatatgaatgattcattaattcatcattctcagtgcagtatccagcaagnnnnnnncatcgttggtcatatgaatcgtaaataaccc |
114 |
Q |
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| T |
54775470 |
cactcactcatatgatatgaatgattcattaattcatcattctcagtgcagtatccagcaagaaaaaaacatcgttggtcatatgaatcgtaaataaccc |
54775371 |
T |
|
| Q |
115 |
attaaccaaccttagtcgaaggttgtttggatgtctcttccaaagatcttccctcctcaacatcgtcaactattacaagacctcatagaatgtactcaca |
214 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775370 |
attaaccaaccttagtcaaaggttgtttggatgtctcttccaaagatcttccctccgcaacatcgtcaactattacaagacctcatagaatgtactcaca |
54775271 |
T |
|
| Q |
215 |
acaaaaacatcctcaaaggtcgaacacttcacgctcgcattctaaaaactggttccatctcttccatttacgtcaccaacactttcctcaatctctacgc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775270 |
acaaaaacatcctcaaaggtcgaacacttcacgctcgcattctaaaaactggttccatctcttccatttacgtcaccaacactttcctcaatctctacgc |
54775171 |
T |
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| Q |
315 |
caaaaccaatcacttatcacacgctttaaccccctttg |
352 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
54775170 |
caaaaccaatcacttatcacacgctttaaccctctttg |
54775133 |
T |
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