View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3659_high_2 (Length: 376)
Name: NF3659_high_2
Description: NF3659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3659_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 161; Significance: 9e-86; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 127 - 356
Target Start/End: Original strand, 35348092 - 35348319
Alignment:
| Q |
127 |
cttagcatatcgtatatctaattccattttcttcttttcaacatacacttttta-catagccagcgttaaaacaaaaatggcatccatttctttggccat |
225 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
35348092 |
cttagcatatcatataactaattccattttcttctttataacatacattttttaacatagccagcgtaaaaacaaaaatggcatccatttctttggctat |
35348191 |
T |
|
| Q |
226 |
tactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgcattgaagaagataatcgcaatgga |
325 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
35348192 |
tactccaaagtgcaagcatcatggatacagtgaaggtaac---ggtgattggtttggttatacaagtgtatcttgcattaaagaagataatcgcaatgga |
35348288 |
T |
|
| Q |
326 |
gatcgagactcatgcaaggaaggtgatgatg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
35348289 |
gatcgagactcatgcaaggaaggtgatgatg |
35348319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 125 - 356
Target Start/End: Original strand, 35343400 - 35343628
Alignment:
| Q |
125 |
atcttagcatatcgtatatctaattccattttcttcttttcaacatacactttttacatagccagcgttaaaacaaaaatggcatccatttctttggcca |
224 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
35343400 |
atcttagcatatcatataactaattccattttcttctttttaacatacacttttcacatagccagcgtaaaaaccaaaatggcatccatttctttggcca |
35343499 |
T |
|
| Q |
225 |
ttactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgcattgaagaagataatcgcaatgg |
324 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
35343500 |
ttattccaaagtgcgagcagcatggatatggtgaaggt---aacggtgattggattagttatacatgtgtatcttgcattgaagaaaattatcacaatgg |
35343596 |
T |
|
| Q |
325 |
agatcgagactcatgcaaggaaggtgatgatg |
356 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| |
|
|
| T |
35343597 |
agatcgagactcatgcaaagaaggcgatgatg |
35343628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 133 - 356
Target Start/End: Complemental strand, 35355876 - 35355655
Alignment:
| Q |
133 |
atatcgtatatctaattccattttcttcttttc-aacatacactttttacatagccagcgttaaaacaaaaatggcatccatttctttggccattactcc |
231 |
Q |
| |
|
||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
35355876 |
atatcatataactaattccattttcttcttttccaacatacactttttacatagcaagcgtcaaaaccaaaatggcatcaatttctatggccattactcc |
35355777 |
T |
|
| Q |
232 |
aaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgcattgaagaagataatcgcaatggagatcga |
331 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| || |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35355776 |
aaagtgcaaggagcatggatatgatgaaggt---aatggtgattggtttggttatacatatgtatcttgcattgaagaagattatcgcaatggagatcga |
35355680 |
T |
|
| Q |
332 |
gactcatgcaaggaaggtgatgatg |
356 |
Q |
| |
|
||||| | || |||||| ||||||| |
|
|
| T |
35355679 |
gactcttacatggaaggcgatgatg |
35355655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 200 - 348
Target Start/End: Complemental strand, 35371708 - 35371569
Alignment:
| Q |
200 |
aaaatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatctt |
299 |
Q |
| |
|
|||||||||||||||| ||| |||| ||| |||||||||||| |||| ||||||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
35371708 |
aaaatggcatccattttgatggtcattgctctaaagtgcaagcaacatgtatatggtgaaggtaa---------ttggtttgattatacaagtgtatctt |
35371618 |
T |
|
| Q |
300 |
gcattgaagaagataatcgcaatggagatcgagactcatgcaaggaagg |
348 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
35371617 |
gcattgaagaagattaccgcaatggagatcgagactcatgcaaggaagg |
35371569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 356
Target Start/End: Complemental strand, 35346220 - 35346048
Alignment:
| Q |
181 |
catagccagcgttaaaacaaaaatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggttt |
280 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||| || |||| ||||| |||||||||| ||| || ||||||||| |||||||||||||||| |
|
|
| T |
35346220 |
catagccagcttcaaaactaaaatggcatccattttcacggtcattgctccattgtgcaagcagaatgcatgtggtgaagg---caacggtgattggttt |
35346124 |
T |
|
| Q |
281 |
ggttatacatgtgtatcttgcattgaagaagataatcgcaatggagatcgagactcatgcaaggaaggtgatgatg |
356 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||| |||||||||| |||| ||| || | ||||||||| ||||||| |
|
|
| T |
35346123 |
ggttatacatctgtatcttgtattgtagaagattatcgcaatggggatcaagattcttacaaggaaggcgatgatg |
35346048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 200 - 356
Target Start/End: Complemental strand, 35374492 - 35374345
Alignment:
| Q |
200 |
aaaatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatctt |
299 |
Q |
| |
|
||||||||||||||||| ||| |||| ||| ||| |||||||| |||| ||||||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
35374492 |
aaaatggcatccatttccatggtcattgctctaaactgcaagcaacatgcatatggtgaaggtaa---------ttggtttgattatacaagtgtatctt |
35374402 |
T |
|
| Q |
300 |
gcattgaagaagataatcgcaatggagatcgagactcatgcaaggaaggtgatgatg |
356 |
Q |
| |
|
|||||||||||||| ||| || ||||| ||||| || | | ||||||||||||||| |
|
|
| T |
35374401 |
gcattgaagaagattatcataacggagaccgagattcttaccaggaaggtgatgatg |
35374345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 35364396 - 35364350
Alignment:
| Q |
267 |
acggtgattggtttggttatacatgtgtatcttgcattgaagaagat |
313 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
35364396 |
acggtgattggttcggttatacgtgtgtatcttgcattgaagaagat |
35364350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 313
Target Start/End: Complemental strand, 35368333 - 35368225
Alignment:
| Q |
202 |
aatggcatccatttctttggccattactccaaagtgcaagcagcatggatatggtgaaggtaacaacggtgattggtttggttatacatgtgtatcttgc |
301 |
Q |
| |
|
||||| || |||||| ||| |||| ||| ||| ||||||||||||| ||||||||||||| | | |||||||||||||| ||||| ||||||||| |
|
|
| T |
35368333 |
aatggtattcatttccatggtcattgctctaaactgcaagcagcatgcatatggtgaaggtgaa---gttgattggtttggttgtacatctgtatcttgt |
35368237 |
T |
|
| Q |
302 |
attgaagaagat |
313 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35368236 |
attgaagaagat |
35368225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 313
Target Start/End: Complemental strand, 35335699 - 35335586
Alignment:
| Q |
200 |
aaaatggcatccatttctttggccattactccaaagtgcaagcagcatggat---atggtgaaggtaacaacggtgattggtttggttatacatgtgtat |
296 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||||||||||| |||| || | |||||||| | || |||||||||||||||| ||| | ||| |
|
|
| T |
35335699 |
aaaatggcatccatttccatggtcattgctccaaagtgcaagcaacatgcatttaacggtgaagg---cgactgtgattggtttggttacacaaatatat |
35335603 |
T |
|
| Q |
297 |
cttgcattgaagaagat |
313 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35335602 |
cttgcattgaagaagat |
35335586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 35351299 - 35351227
Alignment:
| Q |
144 |
ctaattccattttcttcttttcaacatacactttttacatagccagcgttaaaacaaaaatggcatccatttc |
216 |
Q |
| |
|
||||||||||||||||||||| || | | |||||| ||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
35351299 |
ctaattccattttcttcttttaaatacaaacttttcacataatcagcgtcaaaaccaaaatggcatccatttc |
35351227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 35340876 - 35340805
Alignment:
| Q |
145 |
taattccattttcttcttttcaacatacactttttacatagccagcgttaaaacaaaaatggcatccatttc |
216 |
Q |
| |
|
|||||||||||||||||||| | || |||||||| ||||||||| | | | ||| |||||| |||||||||| |
|
|
| T |
35340876 |
taattccattttcttcttttaatcacacacttttaacatagccaacctcacaaccaaaatgacatccatttc |
35340805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University