View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3659_high_8 (Length: 314)

Name: NF3659_high_8
Description: NF3659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3659_high_8
NF3659_high_8
[»] chr6 (1 HSPs)
chr6 (1-289)||(15909163-15909447)
[»] scaffold0690 (1 HSPs)
scaffold0690 (1-301)||(2658-2948)
[»] chr2 (2 HSPs)
chr2 (1-122)||(24773005-24773124)
chr2 (3-59)||(19005100-19005157)
[»] chr4 (5 HSPs)
chr4 (3-107)||(54005774-54005877)
chr4 (153-289)||(54005608-54005739)
chr4 (202-289)||(39477967-39478055)
chr4 (1-66)||(39478169-39478236)
chr4 (7-97)||(47561177-47561267)
[»] chr7 (1 HSPs)
chr7 (197-302)||(21933792-21933897)
[»] chr1 (1 HSPs)
chr1 (44-194)||(15738956-15739103)
[»] chr5 (1 HSPs)
chr5 (11-66)||(17273525-17273580)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 15909447 - 15909163
Alignment:
Q  1 ctaaggtggaccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaaaatg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||    
T  15909447 ctaaggtggaccacggcccacccacccaaaagcaaaataatttttttctataagaaaattagtaaaacattcctttttattaaagaaaaatacaaaaatg 15909348  T
Q  101 gtccaccttctttactactcaaccacgacccttccttttaattcccaggctcttctaacgcacgccatttccaacttcaactttcctcttcaacccttca 200  Q
    ||||||||||| |||||||||||||||||||||||||||    |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  15909347 gtccaccttctctactactcaaccacgacccttcctttt----cccaagctcttctaacgcacgcaatttccaacttcaactttcctcttcaactcttca 15909252  T
Q  201 actcttttaatgtcgctgcccattccactttcaagctacccaatcagtgttgtcatagccgatgtgaaagccctcttcgcagtctctct 289  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15909251 actcttttaatgtcgctgcccattccactttcaagttacccaatcagtgttgtcatagccgatgtgaaagccctcttcgtagtctctct 15909163  T

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Target: scaffold0690 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 2658 - 2948
Alignment:
Q  1 ctaaggtggaccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaaaatg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||    
T  2658 ctaaggtggaccacggcccacccacccaaaagcaaaataatttttttctataagaaaattagtaaaacattcctttttattaaagaaaaatacaaaaatg 2757  T
Q  101 gtccaccttctttactactcaaccacgacccttccttttaattcccaggctcttctaacgcacgccatttccaacttcaactttcctcttcaacccttca 200  Q
    ||||||||||| |||||||||||||||||||||||||    |||||||||||||||||||||| | |||||||||||||||||||||        |||||    
T  2758 gtccaccttctctactactcaaccacgacccttcctt----ttcccaggctcttctaacgcacacaatttccaacttcaactttcct--------cttca 2845  T
Q  201 actcttttaatgtcgctgcccattccactttcaagctacccaatcagtgttgtcatagccgatgtgaaagccctcttcgcag--tctctcttactccttg 298  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  2846 actcttttaatgtggctgcccattccactttcaagttacccaatcagtgttgtcatagccgatgtgaaagccctcttcgtagtctctctcttactccttg 2945  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 24773005 - 24773124
Alignment:
Q  1 ctaaggtggaccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaaaatg 100  Q
    |||||||||||||||  ||||||| ||||||||||||||| |||||||||||||||||| |||||| ||  |||| ||||||||| |||| || ||||||    
T  24773005 ctaaggtggaccacgacccacccatccaaaagcaaaataa-tgttttctataaggaaatcactaaaacaccccttgttattaaaggaaaatac-aaaatg 24773102  T
Q  101 gtccaccttctttactactcaa 122  Q
    || |||| |||  |||||||||    
T  24773103 gttcaccctctccactactcaa 24773124  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 19005100 - 19005157
Alignment:
Q  3 aaggtggaccacggtccacccacccaaaagcaaaataattgtttt-ctataaggaaat 59  Q
    ||||||| |||| | |||||||||||||||||||||| || |||| ||||||||||||    
T  19005100 aaggtgggccacagcccacccacccaaaagcaaaatattttttttcctataaggaaat 19005157  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 54005877 - 54005774
Alignment:
Q  3 aaggtggaccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaaaatggt 102  Q
    ||||||| |||||  |||||||||||||||||||||| || ||| ||||||||||||||||||| ||  | ||  ||||||||||||| || ||||||||    
T  54005877 aaggtgggccacgacccacccacccaaaagcaaaatatttttttcctataaggaaattactaaaacaccctttgctattaaagaaaaatac-aaaatggt 54005779  T
Q  103 ccacc 107  Q
    |||||    
T  54005778 ccacc 54005774  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 289
Target Start/End: Complemental strand, 54005739 - 54005608
Alignment:
Q  153 ttctaacgcacgccatttccaacttcaactttcctcttcaacccttcaactcttttaatgtcgctgcccattccactttcaagctacccaatcagtgttg 252  Q
    ||||||||||| | ||||| ||||||||||| |||||||| | |||  |    | || |||||||||||||||| ||||||| ||||| ||| | |||||    
T  54005739 ttctaacgcacacaatttcaaacttcaacttccctcttcagctctttta----tatattgtcgctgcccattccgctttcaatctacc-aataattgttg 54005645  T
Q  253 tcatagccgatgtgaaagccctcttcgcagtctctct 289  Q
    |||||| ||| |||||||||||||||  |||||||||    
T  54005644 tcatagtcgaggtgaaagccctcttcttagtctctct 54005608  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 39478055 - 39477967
Alignment:
Q  202 ctcttttaatgtcgctgcccattccactttcaagctacccaatcagtgttgtcatagccgatgtg-aaagccctcttcgcagtctctct 289  Q
    ||||||||  |||||||||| |||| ||||||| |||||||||||   ||| |||||| || ||| ||||||||||||| |||||||||    
T  39478055 ctcttttaccgtcgctgcccgttccgctttcaatctacccaatcaacattgccatagctgaggtgaaaagccctcttcgtagtctctct 39477967  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 39478236 - 39478169
Alignment:
Q  1 ctaaggtggaccacggtccacccacccaaaagcaaaataa--ttgttttctataaggaaattactaaa 66  Q
    ||||||||| |||| | |||||||||||||||||||| ||  || ||||||||||| |||||||||||    
T  39478236 ctaaggtgggccacagaccacccacccaaaagcaaaacaatttttttttctataagaaaattactaaa 39478169  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 47561267 - 47561177
Alignment:
Q  7 tggaccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaaa 97  Q
    |||||| ||||  ||||| |||||| ||||| |||| ||| | ||||||||| ||||||| || || || |||||||||||||| ||||||    
T  47561267 tggaccgcggtatacccatccaaaaacaaaacaattttttccaataaggaaaatactaaaacactctttgttattaaagaaaaatacaaaa 47561177  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 21933897 - 21933792
Alignment:
Q  197 ttcaactcttttaatgtcgctgcccattccactttcaagctacccaatcagtgttgtcatagccgatgtgaaagccctcttcgcagtctctcttactcct 296  Q
    |||| |||||||| ||| | || || |||||| |||||  ||||||||  | |||||||||||||| |||||||||||||||| | ||||||| ||||||    
T  21933897 ttcagctcttttactgttgttgtccgttccaccttcaatttacccaattggcgttgtcatagccgaggtgaaagccctcttcgtaatctctctcactcct 21933798  T
Q  297 tgtctc 302  Q
    ||||||    
T  21933797 tgtctc 21933792  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 15739103 - 15738956
Alignment:
Q  44 ttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaa----aatggtccaccttctttactactcaaccacgacccttcctttt 139  Q
    |||||||||||||||| |||||| ||   ||| |||||||||||||| |||||    ||||| ||||| |||| ||||||||| || | |||||||  |     
T  15739103 ttttctataaggaaatgactaaaacaccacttattattaaagaaaaatacaaagttaaatggcccaccctcttcactactcaagcatggcccttcccct- 15739005  T
Q  140 aattcccaggctcttctaacgcacgccatttccaacttcaactttcctcttcaac 194  Q
          |||||||||| ||||||||| |||||||||||||| || ||||||||||    
T  15739004 ------caggctcttccaacgcacgcaatttccaacttcaatttacctcttcaac 15738956  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 17273580 - 17273525
Alignment:
Q  11 ccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaa 66  Q
    |||||| |||||| ||||||| ||||| |||| ||||||||||||||| |||||||    
T  17273580 ccacggcccaccctcccaaaaacaaaacaatttttttctataaggaaaatactaaa 17273525  T

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