View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3659_high_9 (Length: 311)
Name: NF3659_high_9
Description: NF3659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3659_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 31389466 - 31389770
Alignment:
| Q |
8 |
aagcagagaagagaaaggtcgaacagaatgctgaattcaaaaatacttaaaaggattacaagaaggatagcaacttacataaaagagaatttaaaaatac |
107 |
Q |
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| T |
31389466 |
aagcagagaagagaaaggtcgaacagaatgctgaattcaaaaatacttaaaaggattacaagaaggatagcaacttacataaaagagaatttaaaaatac |
31389565 |
T |
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| Q |
108 |
aatatcaattacaaatatcatacattttttaaggacaagtgt-gtatatttttcagacacaaattagagacccttaacttctaatgactttaccatgtct |
206 |
Q |
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| T |
31389566 |
aatatcaattacaaatatcatacattttttaaggacaagtgttgtatatttttcagacacaaattagagactcttaacttctaatgactttaccatgtct |
31389665 |
T |
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| Q |
207 |
tcaacaattcttgcaattgtccatgactccattattgctcctcgacaaacaactaatcattacaccctatggattaaatgagagttgccaatcttctttg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31389666 |
tcaacaattcttgcaattgtccatgactccattattgctccccgacaaacaactaattattacaccctatggattaaatgagagttgccaatcttctttc |
31389765 |
T |
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| Q |
307 |
aaaac |
311 |
Q |
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||||| |
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| T |
31389766 |
aaaac |
31389770 |
T |
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