View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3660_high_10 (Length: 331)

Name: NF3660_high_10
Description: NF3660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3660_high_10
NF3660_high_10
[»] chr6 (1 HSPs)
chr6 (18-306)||(15909163-15909447)
[»] scaffold0690 (1 HSPs)
scaffold0690 (18-318)||(2658-2948)
[»] chr2 (2 HSPs)
chr2 (18-139)||(24773005-24773124)
chr2 (20-76)||(19005100-19005157)
[»] chr4 (4 HSPs)
chr4 (20-306)||(54005608-54005877)
chr4 (219-306)||(39477967-39478055)
chr4 (18-83)||(39478169-39478236)
chr4 (24-114)||(47561177-47561267)
[»] chr7 (2 HSPs)
chr7 (214-319)||(21933792-21933897)
chr7 (211-311)||(8562388-8562488)
[»] chr1 (1 HSPs)
chr1 (61-215)||(15738952-15739103)
[»] chr5 (1 HSPs)
chr5 (28-83)||(17273525-17273580)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 15909447 - 15909163
Alignment:
Q  18 ctaaggtggaccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaaaatg 117  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||    
T  15909447 ctaaggtggaccacggcccacccacccaaaagcaaaataatttttttctataagaaaattagtaaaacattcctttttattaaagaaaaatacaaaaatg 15909348  T
Q  118 gtccaccttctttactactcaaccacgacccttccttttaattcccaggctcttctaacgcacgccatttccaacttcaactttcctcttcaactcttca 217  Q
    ||||||||||| |||||||||||||||||||||||||||    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15909347 gtccaccttctctactactcaaccacgacccttcctttt----cccaagctcttctaacgcacgcaatttccaacttcaactttcctcttcaactcttca 15909252  T
Q  218 actcttttaatgtcgctgcccattccactttcaagctacccaatcagtgttgtcatagccgatgtgaaagccctcttcgcagtctctct 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15909251 actcttttaatgtcgctgcccattccactttcaagttacccaatcagtgttgtcatagccgatgtgaaagccctcttcgtagtctctct 15909163  T

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Target: scaffold0690 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 2658 - 2948
Alignment:
Q  18 ctaaggtggaccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaaaatg 117  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||    
T  2658 ctaaggtggaccacggcccacccacccaaaagcaaaataatttttttctataagaaaattagtaaaacattcctttttattaaagaaaaatacaaaaatg 2757  T
Q  118 gtccaccttctttactactcaaccacgacccttccttttaattcccaggctcttctaacgcacgccatttccaacttcaactttcctcttcaactcttca 217  Q
    ||||||||||| |||||||||||||||||||||||||    |||||||||||||||||||||| | |||||||||||||||||||        |||||||    
T  2758 gtccaccttctctactactcaaccacgacccttcctt----ttcccaggctcttctaacgcacacaatttccaacttcaactttc--------ctcttca 2845  T
Q  218 actcttttaatgtcgctgcccattccactttcaagctacccaatcagtgttgtcatagccgatgtgaaagccctcttcgcag--tctctcttactccttg 315  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  2846 actcttttaatgtggctgcccattccactttcaagttacccaatcagtgttgtcatagccgatgtgaaagccctcttcgtagtctctctcttactccttg 2945  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 24773005 - 24773124
Alignment:
Q  18 ctaaggtggaccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaaaatg 117  Q
    |||||||||||||||  ||||||| ||||||||||||||| |||||||||||||||||| |||||| ||  |||| ||||||||| |||| || ||||||    
T  24773005 ctaaggtggaccacgacccacccatccaaaagcaaaataa-tgttttctataaggaaatcactaaaacaccccttgttattaaaggaaaatac-aaaatg 24773102  T
Q  118 gtccaccttctttactactcaa 139  Q
    || |||| |||  |||||||||    
T  24773103 gttcaccctctccactactcaa 24773124  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 19005100 - 19005157
Alignment:
Q  20 aaggtggaccacggtccacccacccaaaagcaaaataattgtttt-ctataaggaaat 76  Q
    ||||||| |||| | |||||||||||||||||||||| || |||| ||||||||||||    
T  19005100 aaggtgggccacagcccacccacccaaaagcaaaatattttttttcctataaggaaat 19005157  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 54005877 - 54005608
Alignment:
Q  20 aaggtggaccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaaaatggt 119  Q
    ||||||| |||||  |||||||||||||||||||||| || ||| ||||||||||||||||||| ||  | ||  ||||||||||||| || ||||||||    
T  54005877 aaggtgggccacgacccacccacccaaaagcaaaatatttttttcctataaggaaattactaaaacaccctttgctattaaagaaaaatac-aaaatggt 54005779  T
Q  120 ccaccttctttactactcaaccacgacccttccttttaattcccaggctcttctaacgcacgccatttccaacttcaactttcctcttcaactcttcaac 219  Q
    |||||  |||| | |||    |||| |||||||||      | |||  | ||||||||||| | ||||| ||||||||||| |||||||| |||||        
T  54005778 ccacc--cttt-ccact----cacggcccttcctt----ccctcagatttttctaacgcacacaatttcaaacttcaacttccctcttcagctctt---- 54005694  T
Q  220 tcttttaatgtcgctgcccattccactttcaagctacccaatcagtgttgtcatagccgatgtgaaagccctcttcgcagtctctct 306  Q
    |  | || |||||||||||||||| ||||||| ||| ||||| | ||||||||||| ||| |||||||||||||||  |||||||||    
T  54005693 ttatatattgtcgctgcccattccgctttcaatcta-ccaataattgttgtcatagtcgaggtgaaagccctcttcttagtctctct 54005608  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 39478055 - 39477967
Alignment:
Q  219 ctcttttaatgtcgctgcccattccactttcaagctacccaatcagtgttgtcatagccgatgtg-aaagccctcttcgcagtctctct 306  Q
    ||||||||  |||||||||| |||| ||||||| |||||||||||   ||| |||||| || ||| ||||||||||||| |||||||||    
T  39478055 ctcttttaccgtcgctgcccgttccgctttcaatctacccaatcaacattgccatagctgaggtgaaaagccctcttcgtagtctctct 39477967  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 39478236 - 39478169
Alignment:
Q  18 ctaaggtggaccacggtccacccacccaaaagcaaaataa--ttgttttctataaggaaattactaaa 83  Q
    ||||||||| |||| | |||||||||||||||||||| ||  || ||||||||||| |||||||||||    
T  39478236 ctaaggtgggccacagaccacccacccaaaagcaaaacaatttttttttctataagaaaattactaaa 39478169  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 47561267 - 47561177
Alignment:
Q  24 tggaccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaaa 114  Q
    |||||| ||||  ||||| |||||| ||||| |||| ||| | ||||||||| ||||||| || || || |||||||||||||| ||||||    
T  47561267 tggaccgcggtatacccatccaaaaacaaaacaattttttccaataaggaaaatactaaaacactctttgttattaaagaaaaatacaaaa 47561177  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 319
Target Start/End: Complemental strand, 21933897 - 21933792
Alignment:
Q  214 ttcaactcttttaatgtcgctgcccattccactttcaagctacccaatcagtgttgtcatagccgatgtgaaagccctcttcgcagtctctcttactcct 313  Q
    |||| |||||||| ||| | || || |||||| |||||  ||||||||  | |||||||||||||| |||||||||||||||| | ||||||| ||||||    
T  21933897 ttcagctcttttactgttgttgtccgttccaccttcaatttacccaattggcgttgtcatagccgaggtgaaagccctcttcgtaatctctctcactcct 21933798  T
Q  314 tgtctc 319  Q
    ||||||    
T  21933797 tgtctc 21933792  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 311
Target Start/End: Complemental strand, 8562488 - 8562388
Alignment:
Q  211 ctcttcaactcttttaatgtcgctgcccattccactttcaagctacccaatcagtgttgtcatagccgatgtgaaagccctcttcgcagtctctcttact 310  Q
    ||||||| |||||||||||||||| ||| || |||| || | |||  ||||| |||||||  ||| ||| ||||||||||   ||||||||||||| |||    
T  8562488 ctcttcagctcttttaatgtcgcttcccgtttcactctctatctattcaatccgtgttgttgtaggcgaggtgaaagcccctgtcgcagtctctctcact 8562389  T
Q  311 c 311  Q
    |    
T  8562388 c 8562388  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 15739103 - 15738952
Alignment:
Q  61 ttttctataaggaaattactaaatcattcctttttattaaagaaaaacacaaa----aatggtccaccttctttactactcaaccacgacccttcctttt 156  Q
    |||||||||||||||| |||||| ||   ||| |||||||||||||| |||||    ||||| ||||| |||| ||||||||| || | |||||||  |     
T  15739103 ttttctataaggaaatgactaaaacaccacttattattaaagaaaaatacaaagttaaatggcccaccctcttcactactcaagcatggcccttcccct- 15739005  T
Q  157 aattcccaggctcttctaacgcacgccatttccaacttcaactttcctcttcaactctt 215  Q
          |||||||||| ||||||||| |||||||||||||| || ||||||||||||||    
T  15739004 ------caggctcttccaacgcacgcaatttccaacttcaatttacctcttcaactctt 15738952  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 17273580 - 17273525
Alignment:
Q  28 ccacggtccacccacccaaaagcaaaataattgttttctataaggaaattactaaa 83  Q
    |||||| |||||| ||||||| ||||| |||| ||||||||||||||| |||||||    
T  17273580 ccacggcccaccctcccaaaaacaaaacaatttttttctataaggaaaatactaaa 17273525  T

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