View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3660_high_4 (Length: 470)
Name: NF3660_high_4
Description: NF3660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3660_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 153 - 348
Target Start/End: Complemental strand, 34772023 - 34771828
Alignment:
| Q |
153 |
gctacttcatcaccagcttccctctcttcttgctgccatgacttttttggcttttcatgattttctttgcaagacaagcaccatccatcattataattgc |
252 |
Q |
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| T |
34772023 |
gctacttcatcaccagcttccctctcttcttgctgccatgacttttttggcttttcatgattttctttgcaagacaagcaccatccatcattataattgc |
34771924 |
T |
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| Q |
253 |
acaagcaggtcatctcatgtctttccctttcataagctgaaacaaaataagattaacaaaattataactcataacaaccaaccatcccagattctc |
348 |
Q |
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| T |
34771923 |
acaagcaggtcatctcatgtctttccctttcataagctgaaacaaaataagattaacaaaattataactcataacaaccaaccatcccagattctc |
34771828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34772175 - 34772113
Alignment:
| Q |
1 |
tagcttcccacaaatctaaagaaactgcaaacctaattctattcttcttcaacttatccaacc |
63 |
Q |
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| T |
34772175 |
tagcttcccacaaatctaaagaaacttcaaacctcattctattcttcttcaactcatccaacc |
34772113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 457
Target Start/End: Complemental strand, 34771760 - 34771719
Alignment:
| Q |
416 |
ggtaaaagtctatcaagtttggaaagatgtaatgtaacatgt |
457 |
Q |
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| T |
34771760 |
ggtaaaagtctatcaagtttggaaagatgtaatgtaacatgt |
34771719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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