View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3660_low_1 (Length: 1068)
Name: NF3660_low_1
Description: NF3660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3660_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 739; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 119 - 1049
Target Start/End: Complemental strand, 43069647 - 43068698
Alignment:
| Q |
119 |
tgatggcataaactagcttacgaacgagttttatatatgccggaggtgcatgcaggattcaaccagtgtgctacttccttttccttctacctaacaaac- |
217 |
Q |
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| T |
43069647 |
tgatggcataaactagcttacgaacgagttttat----gccggaggtgca----ggattcaaccagtgtgctacttccttttccttctacctaacaaaca |
43069556 |
T |
|
| Q |
218 |
---tactactaacatttccacctttatccaaacagttacactagaaatcctatcaccatgtggaaaacataagagtgaggagacactcatcgtgatcaat |
314 |
Q |
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| T |
43069555 |
aactactactaacatttccacctttatccaaacagttacactggaaaccctatcaccatatggaaaacataagagtgaggagacactcat---gatcaat |
43069459 |
T |
|
| Q |
315 |
catctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaata-ttttgtgcatgaaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43069458 |
catctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaatatttttgtgcatgaaa |
43069359 |
T |
|
| Q |
414 |
tgaaacaaaaagctcttacaagattgaatttcaaaagnnnnnnngtacggcaaaggaagatctagaccctccaaggaaactccctcttctagttattata |
513 |
Q |
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| T |
43069358 |
tgaaacaaaaagctcttacaagattgaatttcaaaagtttttttgtacggcaaaggaagatctagaccctccaaggaaactccctcttctagttattata |
43069259 |
T |
|
| Q |
514 |
caagctcctcttgaagnnnnnnnnngatattgttgcctttggagtgcacaagtaccggccaaagcttttgcatgatttctttttgtttctgtaatttggt |
613 |
Q |
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| T |
43069258 |
caagctcctcttgaagcttttttttgatattgttgcctttggagtgcacaagtaccggccaaagcttttgcatgatttctttttgtttctgtaatttggt |
43069159 |
T |
|
| Q |
614 |
ctctctaatttcttagaaagatcttctacactctgcactctagctaaagaaccaaaagattgtgccttcccttgataaaacatagacaatcctctcctgc |
713 |
Q |
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| T |
43069158 |
ctctctaatttcttagaaagatcttctacactctgcactctagctaaagaaccaaaagattgtgccttcccttgataaaacatagacaatcctctcctgc |
43069059 |
T |
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| Q |
714 |
aaatgtcacaataaatatatagaattgaattaaagtacaacaaaatattcatatagaatat---------------------aaaaatgcatcatgcatg |
792 |
Q |
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| T |
43069058 |
aaatgtcacaataaatatatagaattgaattaaagtacaacaaaatattcatatagaatataaaaattatatatatagcaaaaaaaatgcatcatgcatg |
43068959 |
T |
|
| Q |
793 |
agaa----atattgcttacttcaaagggagatggttcataagttctgatagttcatataagggaccatttgaatgtgatgatgatgaagatgacaaacta |
888 |
Q |
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| T |
43068958 |
agaaatatatattgcttacttcaaagggagatggttcataagttctgatagttcatataagggaccatttgaatgtgatgatgatgaagatgacaaacta |
43068859 |
T |
|
| Q |
889 |
gaagttgaagaggatacttcttgatcatcatctaactctgatgaagaagatgaacacatagaattcattgaatcttctgtaatagatccattcgaaattg |
988 |
Q |
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| T |
43068858 |
gaagttgaagaggatgcttcttgatcatcatctaactctgatgaagaagatgaacacatagaattcattgaatcttctgtaatagatccattcgaaattg |
43068759 |
T |
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| Q |
989 |
aatcagttacatcatcatcatccacatcttgcttaacaatccaatttttgttactgttacc |
1049 |
Q |
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| T |
43068758 |
aatcagttacatcatcatcatccacatcttgcttaacaatccaatttttgttactgttacc |
43068698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 43070220 - 43070153
Alignment:
| Q |
15 |
actatcgtcccttcctcccaatatatataatttattttaacaaatgatgtacacaagagttaacatat |
82 |
Q |
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| T |
43070220 |
actatcgtcccttcctcccaatatatataatttattttaacaaatgatgtacacaagagttaacatat |
43070153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 43069760 - 43069725
Alignment:
| Q |
76 |
aacatatgtaaaatatttgctgattcatatatatat |
111 |
Q |
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| T |
43069760 |
aacatatataaaatatttgctgattcatatatatat |
43069725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 671 - 721
Target Start/End: Original strand, 34038218 - 34038268
Alignment:
| Q |
671 |
gattgtgccttcccttgataaaacatagacaatcctctcctgcaaatgtca |
721 |
Q |
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| T |
34038218 |
gattgagccttcccttgataaaacattgacaaccctctcctgcaaaagtca |
34038268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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