View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3660_low_11 (Length: 254)

Name: NF3660_low_11
Description: NF3660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3660_low_11
NF3660_low_11
[»] chr3 (12 HSPs)
chr3 (21-246)||(2565300-2565525)
chr3 (183-249)||(31435925-31435991)
chr3 (183-249)||(43132159-43132225)
chr3 (182-249)||(1099201-1099268)
chr3 (184-243)||(32071449-32071508)
chr3 (183-243)||(38140366-38140426)
chr3 (183-249)||(6231503-6231569)
chr3 (183-249)||(11239122-11239188)
chr3 (183-249)||(12228258-12228324)
chr3 (185-243)||(18460950-18461008)
chr3 (183-249)||(28124438-28124504)
chr3 (183-249)||(44952311-44952377)
[»] chr2 (21 HSPs)
chr2 (185-249)||(14832813-14832877)
chr2 (172-249)||(2050869-2050946)
chr2 (182-242)||(24499450-24499510)
chr2 (183-249)||(41750532-41750598)
chr2 (186-242)||(1623392-1623448)
chr2 (183-242)||(40950861-40950920)
chr2 (178-249)||(45409253-45409324)
chr2 (183-249)||(1988314-1988380)
chr2 (196-242)||(14253532-14253578)
chr2 (184-249)||(18713660-18713725)
chr2 (185-249)||(28311701-28311765)
chr2 (178-249)||(6171794-6171865)
chr2 (187-241)||(3902467-3902521)
chr2 (183-249)||(4559562-4559628)
chr2 (183-249)||(9733848-9733914)
chr2 (183-240)||(7007585-7007642)
chr2 (181-242)||(37192532-37192593)
chr2 (187-239)||(5002843-5002895)
chr2 (178-242)||(25455034-25455098)
chr2 (185-249)||(37233432-37233496)
chr2 (177-249)||(39995127-39995199)
[»] chr1 (22 HSPs)
chr1 (178-249)||(5518501-5518572)
chr1 (176-249)||(48916017-48916090)
chr1 (178-242)||(29091677-29091741)
chr1 (177-249)||(47037461-47037533)
chr1 (178-249)||(9831867-9831938)
chr1 (187-242)||(13653862-13653917)
chr1 (184-239)||(31806759-31806814)
chr1 (187-242)||(49627535-49627590)
chr1 (187-249)||(30241013-30241075)
chr1 (183-249)||(49822919-49822985)
chr1 (184-242)||(52186049-52186107)
chr1 (183-242)||(1007758-1007817)
chr1 (183-249)||(6978774-6978840)
chr1 (183-249)||(9115841-9115907)
chr1 (183-249)||(13931886-13931952)
chr1 (183-249)||(25789767-25789833)
chr1 (183-249)||(39930461-39930527)
chr1 (183-240)||(24116339-24116396)
chr1 (184-249)||(51445083-51445148)
chr1 (178-242)||(5806288-5806352)
chr1 (187-239)||(20504995-20505047)
chr1 (178-242)||(32202328-32202392)
[»] chr8 (14 HSPs)
chr8 (183-249)||(21137134-21137200)
chr8 (178-249)||(7317376-7317447)
chr8 (183-242)||(33444628-33444687)
chr8 (185-242)||(29421493-29421550)
chr8 (178-249)||(26062147-26062218)
chr8 (183-249)||(10896219-10896285)
chr8 (183-249)||(42755870-42755936)
chr8 (177-242)||(7931249-7931314)
chr8 (180-232)||(5020489-5020541)
chr8 (178-249)||(32660930-32661001)
chr8 (183-242)||(34672344-34672403)
chr8 (183-242)||(38132739-38132798)
chr8 (183-249)||(12710648-12710714)
chr8 (186-242)||(35394400-35394456)
[»] chr5 (9 HSPs)
chr5 (183-243)||(6930653-6930713)
chr5 (181-242)||(32535947-32536008)
chr5 (184-249)||(11855658-11855723)
chr5 (183-242)||(26637045-26637104)
chr5 (183-242)||(42012181-42012240)
chr5 (196-238)||(27481023-27481065)
chr5 (178-242)||(555703-555767)
chr5 (181-237)||(20962605-20962661)
chr5 (196-248)||(28429705-28429757)
[»] chr7 (17 HSPs)
chr7 (183-242)||(41684024-41684083)
chr7 (183-249)||(41632366-41632432)
chr7 (183-248)||(45723211-45723276)
chr7 (183-242)||(28904188-28904247)
chr7 (183-249)||(6656226-6656292)
chr7 (183-249)||(16825356-16825422)
chr7 (178-249)||(18824148-18824220)
chr7 (178-249)||(39554186-39554257)
chr7 (183-249)||(11329996-11330062)
chr7 (183-249)||(27213857-27213923)
chr7 (183-249)||(43949248-43949314)
chr7 (183-249)||(45045629-45045695)
chr7 (196-249)||(34930481-34930534)
chr7 (183-236)||(44820270-44820323)
chr7 (183-243)||(11000712-11000772)
chr7 (184-236)||(19156633-19156685)
chr7 (184-236)||(20756032-20756084)
[»] chr4 (15 HSPs)
chr4 (183-249)||(25932448-25932514)
chr4 (176-249)||(23686794-23686867)
chr4 (178-249)||(35999693-35999764)
chr4 (196-242)||(9327260-9327306)
chr4 (196-242)||(9374019-9374065)
chr4 (196-242)||(9382297-9382343)
chr4 (186-242)||(10400810-10400866)
chr4 (178-242)||(30415916-30415980)
chr4 (178-249)||(40435907-40435978)
chr4 (178-249)||(48879332-48879403)
chr4 (183-249)||(936133-936199)
chr4 (183-249)||(43723271-43723337)
chr4 (183-249)||(47670369-47670435)
chr4 (183-242)||(36860132-36860190)
chr4 (183-239)||(38414223-38414277)
[»] scaffold0006 (1 HSPs)
scaffold0006 (187-242)||(143623-143678)
[»] chr6 (3 HSPs)
chr6 (183-242)||(6705767-6705826)
chr6 (178-249)||(2657703-2657774)
chr6 (178-249)||(8029336-8029407)
[»] scaffold0702 (1 HSPs)
scaffold0702 (183-249)||(3567-3633)
[»] scaffold0662 (1 HSPs)
scaffold0662 (183-249)||(4471-4537)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 2565300 - 2565525
Alignment:
Q  21 cctcgtttgataagtttatggatttgtccatgtatacatctatttgaaacagagaatactatggagttataaaaagttgaaaccggcaattattttgaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2565300 cctcgtttgataagtttatggatttgtccatgtatacatctatttgaaacagagaatactatggagttataaaaagttgaaaccggcaattagtttgaaa 2565399  T
Q  121 tacttatttatttggagttatctaatacgtggaatattgcacatcttagagcaattataagagtgtgtttgtattaagttatatttgttgattcttaaga 220  Q
    ||||||||||||||||||||||  |||||||||  ||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||||||| ||    
T  2565400 tacttatttatttggagttatccgatacgtggagaattgcacatcttaaagcaattataagggtgtgttcgttttaagttatatttgttgattcttagga 2565499  T
Q  221 ataaaatgatagaaatatatatacct 246  Q
    ||||||| ||||||||||||||||||    
T  2565500 ataaaataatagaaatatatatacct 2565525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 31435925 - 31435991
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | ||||||||||||||||||| | ||||||||||||||||||| ||||| ||||||    
T  31435925 gtgtgtttgtttcaagttatatttgttgattcctgagaataaaatgatagaaatgtatatgcctatg 31435991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 43132159 - 43132225
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | ||||||||||||||||||||  |||||||||| |||| ||||||||| ||||||    
T  43132159 gtgtgtttgtttcaagttatatttgttgattctcgagaataaaataataggaatatatatgcctatg 43132225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 1099268 - 1099201
Alignment:
Q  182 agtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    ||||||||||| |||||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  1099268 agtgtgtttgttttaagttataattgttgattcccgggaataaaatgatagaaatgtatatccctatg 1099201  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 32071508 - 32071449
Alignment:
Q  184 tgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatata 243  Q
    ||||||||| | ||||||||||| ||||||  ||| ||||||||||||||||||||||||    
T  32071508 tgtgtttgtttgaagttatatttattgatttctaaaaataaaatgatagaaatatatata 32071449  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 38140366 - 38140426
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatata 243  Q
    |||||||| | ||||||||||||||| ||||| | |||||||||||||| | |||||||||    
T  38140366 gtgtgtttattttaagttatatttgtagattcatgagaataaaatgatatatatatatata 38140426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 6231503 - 6231569
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||   ||||||||||||||| ||| ||||| ||||||    
T  6231503 gtgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtatatgcctatg 6231569  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 11239122 - 11239188
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  11239122 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 11239188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 12228258 - 12228324
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| ||||  |||| ||||| |||| |  |||||||||||||||||||||||| ||||||    
T  12228258 gtgtgtttgttttaaaatatagttgttaattcctgcgaataaaatgatagaaatatatatgcctatg 12228324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 18461008 - 18460950
Alignment:
Q  185 gtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatata 243  Q
    |||||||| | ||||||||||||||| ||| ||| ||| |||| |||||||||||||||    
T  18461008 gtgtttgtttcaagttatatttgttgtttcctaataatgaaataatagaaatatatata 18460950  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 28124438 - 28124504
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| |||||||||||   |||||||||||||| ||| ||||| ||||||    
T  28124438 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatgataggaatgtatatgcctatg 28124504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 44952377 - 44952311
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  44952377 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 44952311  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 14832877 - 14832813
Alignment:
Q  185 gtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||| | ||||||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  14832877 gtgtttgtttcaagttatatttgttgattcctaggaataaaatgatagaaatatatatgcctatg 14832813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 2050946 - 2050869
Alignment:
Q  172 caattataagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| |||||||||| | |||||||| ||||||||||   ||||||||||||||| ||| ||||||||||||    
T  2050946 caattataagtgtgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtatatacctatg 2050869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 24499510 - 24499450
Alignment:
Q  182 agtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    ||||||||||| | ||||||||||||||||||| ||  |||||||||||||||||||||||    
T  24499510 agtgtgtttgtttcaagttatatttgttgattcatagaaataaaatgatagaaatatatat 24499450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 41750598 - 41750532
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| |||||||||| || |||||||||||||||||| ||||| ||||||    
T  41750598 gtgtgtttgtttcaagttataattgttgattcctaggaataaaatgatagaaatgtatatgcctatg 41750532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 1623448 - 1623392
Alignment:
Q  186 tgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    ||||||| |||| |||||||||||||||| ||||| |||||| ||||||||||||||    
T  1623448 tgtttgttttaaattatatttgttgattcctaagagtaaaataatagaaatatatat 1623392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 40950861 - 40950920
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||| | |||||||| |||||||||||   ||||||||||||||||||||||||    
T  40950861 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatatatat 40950920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 45409324 - 45409253
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||||||||||||||  ||| |||||||||||| ||| ||||| ||||||    
T  45409324 taagggtgtgtttgtttcaagttatatttgttgattcccaagtataaaatgataggaatgtatatgcctatg 45409253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 1988380 - 1988314
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | ||||||||||||||||||  |  ||||||||||||||||||||| || ||||||    
T  1988380 gtgtgtttgtttgaagttatatttgttgatttctgggaataaaatgatagaaatatacatgcctatg 1988314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 14253578 - 14253532
Alignment:
Q  196 aagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||    
T  14253578 aagttatatttgttgattctcgggaataaaatgatagaaatatatat 14253532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 18713660 - 18713725
Alignment:
Q  184 tgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    ||||||||| | ||||||||||||||||||| |   |||||||||||| |||||||||| ||||||    
T  18713660 tgtgtttgtttcaagttatatttgttgattcatggtaataaaatgatataaatatatatgcctatg 18713725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 28311701 - 28311765
Alignment:
Q  185 gtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||| | |||||||||||||||||||    |||||||||||||| ||||||||| ||||||    
T  28311701 gtgtttgtttcaagttatatttgttgattcccgggaataaaatgataggaatatatatgcctatg 28311765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 6171865 - 6171794
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||| ||||||||||   ||||||||||||||| ||| ||||| ||||||    
T  6171865 taagggtgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtatatgcctatg 6171794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 3902521 - 3902467
Alignment:
Q  187 gtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatata 241  Q
    |||||| | ||||||||||||||  ||| | ||||||||||||||||||||||||    
T  3902521 gtttgtttcaagttatatttgttctttcctgagaataaaatgatagaaatatata 3902467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 4559628 - 4559562
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||  |||||||||||||| | ||| ||||| ||||||    
T  4559628 gtgtgtttgtttcaagttataattgttgattcccaagaataaaatgattggaatgtatatgcctatg 4559562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 9733848 - 9733914
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  9733848 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 9733914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 7007642 - 7007585
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatat 240  Q
    |||||||| | | |||||||||||||||||||||  | |||||||||| |||||||||    
T  7007642 gtgtgtttatttcaagttatatttgttgattcttggggataaaatgatggaaatatat 7007585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 37192593 - 37192532
Alignment:
Q  181 gagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||||| | |||||||| ||||||||||    |||||||||||||||||| |||||    
T  37192593 gagtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatat 37192532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 5002843 - 5002895
Alignment:
Q  187 gtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatata 239  Q
    |||||| | ||||||||||||| ||||  ||||||||||||||||||| ||||    
T  5002843 gtttgtttcaagttatatttgtagatttctaagaataaaatgatagaagtata 5002895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 25455098 - 25455034
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||| |||||||||| | ||||||||||||| ||||| | |||||||||| ||| ||||| ||||    
T  25455098 taagggtgtgtttgtttcaagttatatttgtagattcctgagaataaaatcataaaaatacatat 25455034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 37233496 - 37233432
Alignment:
Q  185 gtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||| | |||||||||||||||||||    |||||||||||||| || |||||| ||||||    
T  37233496 gtgtttgtttcaagttatatttgttgattcccgggaataaaatgataggaacatatatgcctatg 37233432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 39995127 - 39995199
Alignment:
Q  177 ataagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    ||||| |||||||||| | |||||||| ||||||||||    |||||||||||||| ||| ||||| ||||||    
T  39995127 ataagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 39995199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 5518501 - 5518572
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||||||||||||||  | |||||||||||||||||||||||| ||||||    
T  5518501 taagggtgtgtttgtttcaagttatatttgttgattcccaggaataaaatgatagaaatatatatgcctatg 5518572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 48916017 - 48916090
Alignment:
Q  176 tataagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||| |||||||| | | |||||||||||||||||||   ||||||||||||||||||| ||||| ||||||    
T  48916017 tataagggtgtgtttatttcaagttatatttgttgattccagagaataaaatgatagaaatgtatatgcctatg 48916090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 29091741 - 29091677
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||| |||||||||| | ||||||||||||||||||| | | |||||||||||| ||||||||||    
T  29091741 taagggtgtgtttgtttcaagttatatttgttgattcctgataataaaatgataaaaatatatat 29091677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 47037533 - 47037461
Alignment:
Q  177 ataagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    ||||| |||||||||| | |||||||| ||||||||||    |||||||||||||||||||||||| ||||||    
T  47037533 ataagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatatatatgcctatg 47037461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 9831867 - 9831938
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||| ||||||||||  | |||||||||||||||||| ||||| ||||||    
T  9831867 taagtgtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatagaaatgtatatgcctatg 9831938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 13653917 - 13653862
Alignment:
Q  187 gtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||| | |||||| |||||||||||| | |||||||||||||||||||||||||    
T  13653917 gtttgtttcaagttaaatttgttgattcctgagaataaaatgatagaaatatatat 13653862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 31806759 - 31806814
Alignment:
Q  184 tgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatata 239  Q
    ||||||||| | ||||||||||||| ||||| | ||||||||||||||||||||||    
T  31806759 tgtgtttgtttcaagttatatttgtagattcctgagaataaaatgatagaaatata 31806814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 49627590 - 49627535
Alignment:
Q  187 gtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||| ||||||||| ||||| ||||| | |||||||||||||||||||||||||    
T  49627590 gtttgttttaagttatgtttgtagattcatgagaataaaatgatagaaatatatat 49627535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 30241075 - 30241013
Alignment:
Q  187 gtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||| | |||||||||||||||||| ||   ||||||||||||||||||||||| ||||||    
T  30241075 gtttgtttcaagttatatttgttgatttttggtaataaaatgatagaaatatatatgcctatg 30241013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 49822919 - 49822985
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| |||||||||||   |||||||||||||||||| ||||| ||||||    
T  49822919 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatatgcctatg 49822985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 52186049 - 52186107
Alignment:
Q  184 tgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    ||||||||| | ||||||||||||||||||  | | |||||||||||||||||||||||    
T  52186049 tgtgtttgtttcaagttatatttgttgatttcttataataaaatgatagaaatatatat 52186107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 1007817 - 1007758
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||| | |||||||||||||||||||   ||||||||||||||  |||||||||    
T  1007817 gtgtgtttgtttcaagttatatttgttgattcccgagaataaaatgatatgaatatatat 1007758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 6978840 - 6978774
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  6978840 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 6978774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 9115907 - 9115841
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  9115907 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 9115841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 13931886 - 13931952
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | ||||||||||||| ||||| || ||||||||| ||| ||||| |||| ||||||    
T  13931886 gtgtgtttgtttgaagttatatttgtagattcctaggaataaaatcataaaaatacatatgcctatg 13931952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 25789833 - 25789767
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  25789833 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 25789767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 39930527 - 39930461
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  39930527 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 39930461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 24116339 - 24116396
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatat 240  Q
    |||||||||| | | ||||||||||| ||||| | ||||||||| |||||||||||||    
T  24116339 gtgtgtttgtttcaggttatatttgtagattcctgagaataaaacgatagaaatatat 24116396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 51445083 - 51445148
Alignment:
Q  184 tgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    ||||||||| | |||||||| ||||||||||    ||||||||||||| |||| ||||||||||||    
T  51445083 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatataaatgtatatacctatg 51445148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 5806288 - 5806352
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||| |||||||||| | |||||||| ||||||||||    |||||||||||||||||| |||||    
T  5806288 taagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatat 5806352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 20504995 - 20505047
Alignment:
Q  187 gtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatata 239  Q
    |||||| |||| |||||||||| ||||  | ||||||||||||||||||||||    
T  20504995 gtttgttttaaattatatttgtagatttctgagaataaaatgatagaaatata 20505047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 32202328 - 32202392
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||| |||||||||| | |||||||| ||||||||||   | ||||||||||||||||| |||||    
T  32202328 taagggtgtgtttgtttcaagttataattgttgattcccgaaaataaaatgatagaaatgtatat 32202392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 21137134 - 21137200
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | ||||||||||||||||||| | |||||||||| |||||||||||||| ||||||    
T  21137134 gtgtgtttgtttgaagttatatttgttgattcctgagaataaaataatagaaatatatatgcctatg 21137200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 7317447 - 7317376
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||||||||||||| | || ||||||||||||| ||||||||| ||||||    
T  7317447 taagggtgtgtttgtttcaagttatatttgttgattttcaaaaataaaatgataggaatatatatgcctatg 7317376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 33444628 - 33444687
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||| | ||||||||||||||||||| | |||||||||||||| ||||||||||    
T  33444628 gtgtgtttgtttcaagttatatttgttgattcctgagaataaaatgataaaaatatatat 33444687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 29421493 - 29421550
Alignment:
Q  185 gtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||| | || |||||||||||||||| | |||||||||||||||||||||||||    
T  29421493 gtgtttgtttcaaattatatttgttgattcatgagaataaaatgatagaaatatatat 29421550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 26062218 - 26062147
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||| |||||||||||   |||||||||||||||||| ||||| ||||||    
T  26062218 taagggtgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatattcctatg 26062147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 10896219 - 10896285
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||  | |||||||||||||||||| ||||| ||||||    
T  10896219 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatagaaatgtatatgcctatg 10896285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 42755936 - 42755870
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| |||||||||| |  |||||||||||||||||| ||||| ||||||    
T  42755936 gtgtgtttgtttcaagttataattgttgattcctgggaataaaatgatagaaatgtatatgcctatg 42755870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 7931314 - 7931249
Alignment:
Q  177 ataagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    ||||||| |||||||| | |||||||| |||||||||| |  |||||||||||||||||| |||||    
T  7931314 ataagagagtgtttgtttcaagttataattgttgattcctgggaataaaatgatagaaatgtatat 7931249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 5020489 - 5020541
Alignment:
Q  180 agagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatag 232  Q
    ||||||||||||| | ||||||||||||||||||| |  ||||||||||||||    
T  5020489 agagtgtgtttgtttcaagttatatttgttgattcatgggaataaaatgatag 5020541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 32660930 - 32661001
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||| |||||||||| |  |||||||||||||| ||| ||||| ||||||    
T  32660930 taagggtgtgtttgtttcaagttataattgttgattcctgggaataaaatgataggaatgtatatgcctatg 32661001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 34672403 - 34672344
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||| | ||||| ||||||||||||| | | |||||||||||| ||||||||||    
T  34672403 gtgtgtttgtttgaagttgtatttgttgattcctgaaaataaaatgataaaaatatatat 34672344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 38132739 - 38132798
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||| | |||||||| |||||||||||   |||||||||||||||||| |||||    
T  38132739 gtgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatat 38132798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 12710714 - 12710648
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  12710714 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 12710648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 35394456 - 35394400
Alignment:
Q  186 tgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    ||||||| | ||||||||||| |||||||   |||||||||||| ||||||||||||    
T  35394456 tgtttgtttcaagttatatttattgattcacgagaataaaatgaaagaaatatatat 35394400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 6930713 - 6930653
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatata 243  Q
    |||||||| | | ||||||||||||||||||| | ||||||||||||||||||||||||||    
T  6930713 gtgtgtttatttcaagttatatttgttgattcctgagaataaaatgatagaaatatatata 6930653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 32536008 - 32535947
Alignment:
Q  181 gagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||||| |||||||||| ||||||||||  | |||||||||||||||||| |||||    
T  32536008 gagtgtgtttgttttaagttataattgttgattcccaggaataaaatgatagaaatgtatat 32535947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 11855658 - 11855723
Alignment:
Q  184 tgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    ||||||||| | |||||||| |||||||||| | ||||||||||||||| ||| ||||| ||||||    
T  11855658 tgtgtttgtttcaagttataattgttgattcctgagaataaaatgataggaatgtatatgcctatg 11855723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 26637045 - 26637104
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||| | ||||||||||||||||||  |  |||||||||||||||| |||||||    
T  26637045 gtgtgtttgtttcaagttatatttgttgattaatgggaataaaatgatagaattatatat 26637104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 42012181 - 42012240
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||| | ||| ||||||||||||||||   ||||||||||||||||||| ||||    
T  42012181 gtgtgtttgtttgaagctatatttgttgattctcgggaataaaatgatagaaatacatat 42012240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 27481065 - 27481023
Alignment:
Q  196 aagttatatttgttgattcttaagaataaaatgatagaaatat 238  Q
    |||||||||||||||||| || ||||||||||||||| |||||    
T  27481065 aagttatatttgttgatttttgagaataaaatgataggaatat 27481023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 555703 - 555767
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||| |||||||||| | |||||||| ||||||||||    |||||||||||||||||| |||||    
T  555703 taagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatat 555767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 20962661 - 20962605
Alignment:
Q  181 gagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaata 237  Q
    |||||||||||| | |||||||||| || |||||||  |||||||||||||| ||||    
T  20962661 gagtgtgtttgtttcaagttatattcgtagattcttgggaataaaatgataggaata 20962605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 28429757 - 28429705
Alignment:
Q  196 aagttatatttgttgattcttaagaataaaatgatagaaatatatatacctat 248  Q
    |||||||||| || ||||||||  |||||||||||||||||||| || |||||    
T  28429757 aagttatattcgtagattcttagaaataaaatgatagaaatatacatgcctat 28429705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 41684024 - 41684083
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||| | ||||||||||||||||||| | ||||||| |||||||||||||||||    
T  41684024 gtgtgtttgtttcaagttatatttgttgattcctgagaataatatgatagaaatatatat 41684083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 41632366 - 41632432
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| |||||||||| | ||||||||||||||||||| ||||| ||||||    
T  41632366 gtgtgtttgtttcaagttataattgttgattcctgagaataaaatgatagaaatgtatatgcctatg 41632432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 45723276 - 45723211
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctat 248  Q
    |||||||||| | |||||||||||||||||||   ||||||||||||||| ||||||||| |||||    
T  45723276 gtgtgtttgtttcaagttatatttgttgattcccgagaataaaatgataggaatatatatgcctat 45723211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 28904188 - 28904247
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||| |||||||||| ||||||||||   ||||||||||||||||||| |||||    
T  28904188 gtgtgtttgttttaagttataattgttgattcccgagaataaaatgatagaaatgtatat 28904247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 6656226 - 6656292
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||||||||||||| ||   ||||||||||||  ||||||||||||||||    
T  6656226 gtgtgtttgtttcaagttatatttgttgatttttggaaataaaatgatatgaatatatatacctatg 6656292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 16825356 - 16825422
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||| |||| || |||||||||||||||||| ||||| ||||||    
T  16825356 gtgtgtttgtttcaagttataattgttaattcctaggaataaaatgatagaaatgtatatgcctatg 16825422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 18824220 - 18824148
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatag-aaatatatatacctatg 249  Q
    |||| |||||||||| | ||||| |||||||||||| ||  |||||||||||||| |||||||||| ||||||    
T  18824220 taagggtgtgtttgtttcaagttgtatttgttgatttttgggaataaaatgatagaaaatatatatgcctatg 18824148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 39554257 - 39554186
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  39554257 taagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 39554186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 11330062 - 11329996
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  11330062 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 11329996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 27213857 - 27213923
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  27213857 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 27213923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 43949314 - 43949248
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  43949314 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 43949248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 45045695 - 45045629
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| |||||||||| ||||||||||    |||||||||||||| ||| ||||| ||||||    
T  45045695 gtgtgtttgttttaagttataattgttgattcccgggaataaaatgataggaatgtatatgcctatg 45045629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 34930481 - 34930534
Alignment:
Q  196 aagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||| |||||||||| |  |||||||||||||||||| ||||| ||||||    
T  34930481 aagttataattgttgattcctgggaataaaatgatagaaatgtatatgcctatg 34930534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 44820323 - 44820270
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaat 236  Q
    |||||||||| | |||||||| ||||||||| | | ||||||||||||||||||    
T  44820323 gtgtgtttgtttcaagttataattgttgattttcaggaataaaatgatagaaat 44820270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 11000772 - 11000712
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatata 243  Q
    |||||||||| | ||||||||| ||||||||| |   |||||||||||| |||||||||||    
T  11000772 gtgtgtttgtttcaagttatatatgttgattcctggaaataaaatgatataaatatatata 11000712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 19156685 - 19156633
Alignment:
Q  184 tgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaat 236  Q
    ||||||||| | |||||||||||||  ||| | ||||||||||||||||||||    
T  19156685 tgtgtttgtttcaagttatatttgtatattttcaagaataaaatgatagaaat 19156633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 20756084 - 20756032
Alignment:
Q  184 tgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaat 236  Q
    ||||||||| | |||||||||||||  ||| | ||||||||||||||||||||    
T  20756084 tgtgtttgtttcaagttatatttgtatattttcaagaataaaatgatagaaat 20756032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 25932514 - 25932448
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| |||||||||| || |||||||||||||||||| ||||| ||||||    
T  25932514 gtgtgtttgtttcaagttataattgttgattcctaggaataaaatgatagaaatgtatatgcctatg 25932448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 23686867 - 23686794
Alignment:
Q  176 tataagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||| |||||||||| | |||||||| ||||||||||    |||||||||||||||||||||||| ||||||    
T  23686867 tataagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatatatatgcctatg 23686794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 35999764 - 35999693
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||| |||||||||||   |||||||||||||||||| ||||| ||||||    
T  35999764 taagggtgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtatatgcctatg 35999693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 9327260 - 9327306
Alignment:
Q  196 aagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  9327260 aagttatatttgttgattcctaaaaataaaatgttagaaatatatat 9327306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 9374019 - 9374065
Alignment:
Q  196 aagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  9374019 aagttatatttgttgattcctaaaaataaaatgttagaaatatatat 9374065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 9382297 - 9382343
Alignment:
Q  196 aagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  9382297 aagttatatttgttgattcctaaaaataaaatgttagaaatatatat 9382343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 10400810 - 10400866
Alignment:
Q  186 tgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    ||||||| | |||||||||||||||||| ||  |||||||||||||||||| |||||    
T  10400810 tgtttgtttcaagttatatttgttgatttttgggaataaaatgatagaaatgtatat 10400866  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 30415980 - 30415916
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||| |||||||||| | |||||||||||||||||||   | ||||||||||||| |||||||||    
T  30415980 taagggtgtgtttgtttcaagttatatttgttgattcccgataataaaatgataggaatatatat 30415916  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 40435978 - 40435907
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  40435978 taagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 40435907  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 48879403 - 48879332
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  48879403 taagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 48879332  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 936199 - 936133
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||   ||||||||||||| | ||||||||| ||||||    
T  936199 gtgtgtttgtttcaagttataattgttgattcccgagaataaaatgattggaatatatatccctatg 936133  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 43723337 - 43723271
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| ||||||||||   | ||||||||||||||||| ||||| ||||||    
T  43723337 gtgtgtttgtttcaagttataattgttgattcccgaaaataaaatgatagaaatgtatatgcctatg 43723271  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 47670435 - 47670369
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | |||||||| |||||||||| |   ||||||||||||||||| ||||| ||||||    
T  47670435 gtgtgtttgtttcaagttataattgttgattcctggaaataaaatgatagaaatgtatatgcctatg 47670369  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 36860190 - 36860132
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttga-ttcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||| | |||||||||||||||| ||||||  |||||||||||| ||||||||||    
T  36860190 gtgtgtttgtttcaagttatatttgttgatttctta--aataaaatgatataaatatatat 36860132  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 38414277 - 38414223
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatata 239  Q
    |||||||||| | |||||||||||||||||||    |||||||||||||||||||||    
T  38414277 gtgtgtttgtctaaagttatatttgttgattc--gggaataaaatgatagaaatata 38414223  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 143678 - 143623
Alignment:
Q  187 gtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||| | |||||| |||||||||||| | |||||||||||||||||||||||||    
T  143678 gtttgtttcaagttaaatttgttgattcctgagaataaaatgatagaaatatatat 143623  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 6705767 - 6705826
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatat 242  Q
    |||||||||| | ||||||||||||||||||| |  |||||||||| |||||||||||||    
T  6705767 gtgtgtttgtttcaagttatatttgttgattcattggaataaaatggtagaaatatatat 6705826  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 2657774 - 2657703
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||| ||||||||||    |||||||||||||| ||| ||||||||||||    
T  2657774 taagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtatatacctatg 2657703  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 8029407 - 8029336
Alignment:
Q  178 taagagtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||| |||||||||| | |||||||| ||||||||||    |||||||||||||||||| ||||| ||||||    
T  8029407 taagggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtatatgcctatg 8029336  T

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Target: scaffold0702 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 3567 - 3633
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | ||||||||||||| ||||  || ||||||||| ||| |||||||||| ||||||    
T  3567 gtgtgtttgtttcaagttatatttgtagatttctaggaataaaattataaaaatatatatgcctatg 3633  T

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Target: scaffold0662 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 4537 - 4471
Alignment:
Q  183 gtgtgtttgtattaagttatatttgttgattcttaagaataaaatgatagaaatatatatacctatg 249  Q
    |||||||||| | ||||||||||||| ||||  || ||||||||| ||| |||||||||| ||||||    
T  4537 gtgtgtttgtttcaagttatatttgtagatttctaggaataaaattataaaaatatatatgcctatg 4471  T

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