View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3660_low_2 (Length: 604)
Name: NF3660_low_2
Description: NF3660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3660_low_2 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
| [»] scaffold1064 (2 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0217 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 14234256 - 14233668
Alignment:
| Q |
1 |
aatagcaaaataaactgtaaaa-ctgaaagagaagaatagagacattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctt |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14234256 |
aatagcaaaataaactgtaaaaactgaaagagaagaatagagacattatgcttgcaatttgaatctcattaagaagtgaatgtacacattacaaagcctt |
14234157 |
T |
|
| Q |
100 |
tataaactaacacttgcttgttgaacaagctaattccctaactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaattatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14234156 |
tataaactaacacttgcttgttgaacaagctaattccctaactaactagttttgtaacaaattcttaactaactagcttaggtggcagttatgaattatt |
14234057 |
T |
|
| Q |
200 |
tcttaagactcccctttaattcttaactggtgaacattgaaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaa |
299 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14234056 |
tcttaacactcccctttaattcttaactgctgaacattgaaaaacaccaagtttcttcctaaaaaattcaaatctgtcaagttttactgccttagtaaaa |
14233957 |
T |
|
| Q |
300 |
ccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgc |
399 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14233956 |
ccatctgcaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgc |
14233857 |
T |
|
| Q |
400 |
ttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcat |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14233856 |
ttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcactacttcacatttaagctccttcat |
14233757 |
T |
|
| Q |
500 |
cactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgct |
588 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14233756 |
cactgaatctaaccacatagcttgacaagtagcaaatgttcttgcaatatgctcagcttcacagaatgagagtgcagtaattggttgct |
14233668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 31000644 - 31000575
Alignment:
| Q |
201 |
cttaagactcccctttaattcttaactggtgaacattgaaaaacaccaagtttcttcctcaaaaattcaaa |
271 |
Q |
| |
|
||||| ||||||| ||||||| |||||| |||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
31000644 |
cttaacactcccccttaattcataactgctgaatgtt-aaaaacatcaagtttcttcctcaaaaattcaaa |
31000575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 588
Target Start/End: Complemental strand, 9881429 - 9880840
Alignment:
| Q |
12 |
aaactgtaaaactgaaagag--aagaatagagacattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttata------ |
103 |
Q |
| |
|
||||| |||||||||| ||| |||||| | || | ||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
9881429 |
aaactataaaactgaatgagtaaagaatggcgaaaatatgcttacaatgtgaatctcattaagtagtgaatgtacacattacaaagccgttatataggca |
9881330 |
T |
|
| Q |
104 |
-aactaacacttgcttgttgaacaagctaattccctaactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaattatttct |
202 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||| ||||||| |||||||| | || ||| |||||||||||||||||| |
|
|
| T |
9881329 |
aaactaacactttcttgtagaacaagctaactccataactaactagttttgtaacaaattctcaactaacttgtctacgtgacagttatgaattatttct |
9881230 |
T |
|
| Q |
203 |
taagactcccctttaattcttaactggtgaacattgaaaaa-caccaagtttcttcctcaaaaattcaaatct-gtcaagtttt-actgccttagtaaaa |
299 |
Q |
| |
|
||| ||||||| |||||| | || || |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
9881229 |
taacactcccccttaatt-tgaattgttgaacattgaaaaaacaccaagtttcttcctcaaaaattcaaattttgtcaagtttttactgccttagtaaaa |
9881131 |
T |
|
| Q |
300 |
ccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctg-gtctcaatgtgcttg |
398 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| | ||||| ||||||||| |
|
|
| T |
9881130 |
ccatctgcaagttgcaactcagtgggacaatattgcacctcattcattccattagtcatctgctccctaataaaatggaattttagtctctatgtgcttg |
9881031 |
T |
|
| Q |
399 |
cttctaccatgtgagataggattcttagcaaggcttatggaagattt-gttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttc |
497 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||| ||||||||||||||||||| | ||||||||||||||| ||| |
|
|
| T |
9881030 |
cttctaccatgtgagatgggattcttagcaagacttatggtagattttgttgtcaattatgagggttagaggcttcacaatttcacatttaagctctttc |
9880931 |
T |
|
| Q |
498 |
atcactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgct |
588 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| |||||||| | |||||||| || ||||| || |||||||| |||||| | |||||| |
|
|
| T |
9880930 |
atcactgaatctaaccacaaagtttgacaagtagaaaatgttcctacaatatactcaacttcataggatgagagtacagtaactagttgct |
9880840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 251 - 573
Target Start/End: Complemental strand, 5707059 - 5706737
Alignment:
| Q |
251 |
tttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattcca |
350 |
Q |
| |
|
||||||||||| |||||||||| ||||||| || ||||| || ||||| ||||| | |||||| || || ||||| || || |||| ||||||||||||| |
|
|
| T |
5707059 |
tttcttcctcacaaattcaaatttgtcaagcttcactgcatttgtaaagccatcggcaagttgtagttctgtggggcagtagtgcagctcaatcattcca |
5706960 |
T |
|
| Q |
351 |
ttagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgt |
450 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| | ||| || ||||| ||||| |||| |||| |||||||||| |||||||| |||||||||| |
|
|
| T |
5706959 |
ttagtcacttgctccctaatgaaatggaatctggtctctaagtgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgt |
5706860 |
T |
|
| Q |
451 |
caattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaatata |
550 |
Q |
| |
|
|||| | || || |||||||| | ||||||||| || ||||| |||||||||||||| | || | | |||||||||||||||||||| || ||| || |
|
|
| T |
5706859 |
caatcttcagtgtcagaggctttatcacttcacacttgagctctttcatcactgaatccagccataatgcttgacaagtagcaaatgttcctgtaatgta |
5706760 |
T |
|
| Q |
551 |
cccagcttcacagaatgagagtg |
573 |
Q |
| |
|
| || |||||||| |||| |||| |
|
|
| T |
5706759 |
ctcaacttcacaggatgatagtg |
5706737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 11494262 - 11494070
Alignment:
| Q |
12 |
aaactgtaaaactgaaagagaagaatagagacattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttat-------aa |
104 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
11494262 |
aaactgtaaaactgaaagagaatgatagagagagtatacttgcaatgcgaatctcattaagaagtgaatgtacacattacaaagcctatatataggcaaa |
11494163 |
T |
|
| Q |
105 |
actaacacttgcttgttgaacaagctaattccctaactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaatta |
197 |
Q |
| |
|
||||| |||||||||| | |||| ||| || | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11494162 |
actaatacttgcttgtagcacaaactatctcacaaactaactagttttgtaacaaattcttaactaactagcttagctggcagttatgaatta |
11494070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 242 - 499
Target Start/End: Original strand, 9238338 - 9238596
Alignment:
| Q |
242 |
aacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctca |
341 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| || | | ||| ||||| ||||||| ||| |||| | || |||||||| |||| |||| |
|
|
| T |
9238338 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
9238437 |
T |
|
| Q |
342 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaag |
441 |
Q |
| |
|
||||| |||||||||||||||| || ||||||| | ||||| |||||||| || |||||||||||||| ||||| |||||||| |||| ||||||| | |
|
|
| T |
9238438 |
atcataccattagtcacctgcttccaaatgaaacgaaatctagtctcaatatgtttgcttctaccatgagagatgggattcttgacaagacttatggctg |
9238537 |
T |
|
| Q |
442 |
atttgttgtcaattctgagggtt-agaggcttcaccacttcacatttaagctccttcat |
499 |
Q |
| |
|
| |||||||||||||| || ||| |||||||||| ||||||||| |||| ||| ||||| |
|
|
| T |
9238538 |
acttgttgtcaattctcagtgttaagaggcttcatcacttcacacttaatctctttcat |
9238596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 207 - 588
Target Start/End: Complemental strand, 26905261 - 26904886
Alignment:
| Q |
207 |
actcccctttaattcttaactggtgaacattgaaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctg |
306 |
Q |
| |
|
||||||| ||||||| |||||| | || ||| || |||||||||||||||||| ||||||| |||| ||||||| || | ||||| ||||| ||| || |
|
|
| T |
26905261 |
actccccattaattcataactgctaaatatt-aacaacaccaagtttcttccttaaaaatttaaatttgtcaagcttcaaagcctttgtaaagccacatg |
26905163 |
T |
|
| Q |
307 |
taagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctacc |
406 |
Q |
| |
|
||| ||||| || | |||||||| || | |||||||||| ||||| ||| |||||||| |||||| |||||||| ||||||||||| |||||| |||| |
|
|
| T |
26905162 |
caagctgcagttctataggacaataatgtagctcaatcatttcattattcatctgctccccaatgaagtggaatctagtctcaatgtgtttgcttatacc |
26905063 |
T |
|
| Q |
407 |
atgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaa |
506 |
Q |
| |
|
||| || ||||| ||||||||||| ||||||| |||||||||||||| | || |||||||| |||| ||| || || | ||| |||||||||||| |
|
|
| T |
26905062 |
atgagaaatagggttcttagcaagacttatggctgatttgttgtcaatcttcagtgttagaggtttca----ttcgcacttgatctctttcatcactgaa |
26904967 |
T |
|
| Q |
507 |
tctaaccgcatagtttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgct |
588 |
Q |
| |
|
|| |||| || | |||||| ||| ||||| | |||||||| ||| || |||||||| |||| |||||| ||| ||||||| |
|
|
| T |
26904966 |
tccaacc-aatggcttgacatgtatcaaatatacttgcaatttactcaacttcacaggatgaaagtgcactaacaggttgct |
26904886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 9238214 - 9238267
Alignment:
| Q |
16 |
tgtaaaactgaaagagaagaatagagacattatgcttgcaatgtgaatctcattaa |
71 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
9238214 |
tgtaaaactgaaagagaagaatagag--attatgcttgcaatgtgaatcacattaa |
9238267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 28964763 - 28964850
Alignment:
| Q |
16 |
tgtaaaactgaaagagaaga--atagagacattatgcttgcaat-gtgaatctcattaagaagtgaatgtacacattacaaagccttt |
100 |
Q |
| |
|
||||||||||| |||||||| || |||| | | |||||| ||| ||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
28964763 |
tgtaaaactgagagagaagagaatggagagagtttgcttgtaattgtgaatctcattaagaattgaatgcacacattacaaagccttt |
28964850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 7043342 - 7043394
Alignment:
| Q |
48 |
tgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttt |
100 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
7043342 |
tgcttgtaatatgaatctcattaagttgtgaatgtacacattacatagccttt |
7043394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 26794207 - 26794418
Alignment:
| Q |
1 |
aatagcaaaataaactgtaaaactgaaagagaagaatagagacattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26794207 |
aatagcaaaacaaactgtaaaactgaaagagaagaatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttt |
26794306 |
T |
|
| Q |
101 |
at-------aaactaacacttgcttgttgaacaagctaattccctaactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatga |
193 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||| || |||||| |
|
|
| T |
26794307 |
atataggcaaaactaacacttgcttgtagaacaagctaactccctaactaactagttttgtaacaaaatcttaactaaccagcttaggtgacaattatga |
26794406 |
T |
|
| Q |
194 |
attatttcttaa |
205 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
26794407 |
atcatttcttaa |
26794418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 239 - 588
Target Start/End: Original strand, 37786855 - 37787204
Alignment:
| Q |
239 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacc |
338 |
Q |
| |
|
||||||||| | ||| |||||||| ||||||||||||||||| || ||||| || ||||||||||| | |||||| || || ||||| || || |||| | |
|
|
| T |
37786855 |
aaaaacacctaatttattcctcaagaattcaaatctgtcaagcttcactgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcagc |
37786954 |
T |
|
| Q |
339 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgg |
438 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
37786955 |
tcaatcattccattagtcacttgctctctaatgaaatggaatatggtctcaatgtgtttacttctgccatgtgagattggattctttgcaagacttatgg |
37787054 |
T |
|
| Q |
439 |
aagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgt |
538 |
Q |
| |
|
||||||||||||||| | || ||||||||||||| ||||||||| ||||| |||||||||||||||| | || | | |||||||||||||||||| |
|
|
| T |
37787055 |
ctgatttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagttccttcatcactgaattcagccataatgcttgacaagtagcaaatgt |
37787154 |
T |
|
| Q |
539 |
tcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgct |
588 |
Q |
| |
|
|| |||||| ||| | |||||| | |||||||| | || |||||||||| |
|
|
| T |
37787155 |
tcctgcaatgtactctgcttcataagatgagagtcctgtgattggttgct |
37787204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 242 - 426
Target Start/End: Complemental strand, 6414501 - 6414317
Alignment:
| Q |
242 |
aacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctca |
341 |
Q |
| |
|
|||| |||||||||||||||||| || |||||| ||||| || | ||||| ||||||||||||| ||| |||| || || ||||| || |||| |||| |
|
|
| T |
6414501 |
aacaacaagtttcttcctcaaaagtttaaatctatcaagcttcaaagcctttgtaaaaccatctgcaagctgcaattctgtaggacagtaatgcaactca |
6414402 |
T |
|
| Q |
342 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttag |
426 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||| ||||| ||||| |||||||||| |
|
|
| T |
6414401 |
atcactccattagtcacctgctccctaatgaaatagaatctagtcccaatgtgtttgcttccgccatgagagatgggattcttag |
6414317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 223 - 588
Target Start/End: Complemental strand, 296991 - 296626
Alignment:
| Q |
223 |
taactggtgaacattgaaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagt |
322 |
Q |
| |
|
|||||| |||| ||| ||||||||| | |||||||||||| ||||||||| ||||||| || |||| || ||||||||||| |||||| || || || |
|
|
| T |
296991 |
taactgctgaatattaaaaaacacctaatttcttcctcaagaattcaaatgtgtcaagcttcgctgcttttgtaaaaccatcaacaagttgtagttctgt |
296892 |
T |
|
| Q |
323 |
gggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattc |
422 |
Q |
| |
|
||| || || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||| |||| |||||| |
|
|
| T |
296891 |
ggggcagtagtgcaactctatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgtttacttttgccatgagagacgggattc |
296792 |
T |
|
| Q |
423 |
ttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagttt |
522 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| | || || |||||||||| ||||||||| || ||||| || ||||||||||| | || | | || |
|
|
| T |
296791 |
ttagcaagacttatggctgatttgttgtcaatcttcagtgtcagaggcttcatcacttcacacttgagctcttttatcactgaatccagccatagtgctt |
296692 |
T |
|
| Q |
523 |
gacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgct |
588 |
Q |
| |
|
|| ||||||||||||||| |||||| ||| |||||||| || |||||||||| || |||||||||| |
|
|
| T |
296691 |
gaaaagtagcaaatgttcctgcaatgtactcagcttcataggatgagagtgcggtgattggttgct |
296626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 239 - 577
Target Start/End: Complemental strand, 30380553 - 30380216
Alignment:
| Q |
239 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacc |
338 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| ||||||| || ||||| || ||||| |||| || ||||||||| || || | | | || || | | |
|
|
| T |
30380553 |
aaaaacaccaagttttttcctcaaaaattaaaatatgtcaagcttcactgcttttgtaaa-ccatatgcaagttgcagttctgttgtatagtagtgtagc |
30380455 |
T |
|
| Q |
339 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgg |
438 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| | ||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
30380454 |
tcaatcattccattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttacttttgccatgtgagattggattctaagcaagacttatgg |
30380355 |
T |
|
| Q |
439 |
aagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgt |
538 |
Q |
| |
|
|||||||||||||| || |||||||| |||| ||||||||| || ||||| |||||||||||||| || | | || ||||||||||||||| || |
|
|
| T |
30380354 |
ctgatttgttgtcaatctccagtgttagaggtttcatcacttcacacttgagctctttcatcactgaatccaatcatagagcttgacaagtagcaaaagt |
30380255 |
T |
|
| Q |
539 |
tcttgcaatatacccagcttcacagaatgagagtgcagt |
577 |
Q |
| |
|
|| | |||| || || ||||||| ||| ||||||||| |
|
|
| T |
30380254 |
tccttcaatgtattcaacttcacatgatgcgagtgcagt |
30380216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 239 - 429
Target Start/End: Complemental strand, 35898511 - 35898321
Alignment:
| Q |
239 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacc |
338 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||| || |||||||| |||| |||| | ||||||||| || |||| ||||| |||| | |
|
|
| T |
35898511 |
aaaaacaccaagttccttcctcaagaattcaaatctgtcaaacttcactgcctttttaaagccataagcaagttgcagttccgtggagcaatagtgcagc |
35898412 |
T |
|
| Q |
339 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaa |
429 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || || |||||||| || |||||||| |||| |
|
|
| T |
35898411 |
tcaatcattccattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttactcctgccatgtgatattggattctttgcaa |
35898321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 8265916 - 8265814
Alignment:
| Q |
103 |
aaactaacacttgcttgttgaacaagctaattccctaactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaattatttct |
202 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| | ||||||||||||||||| ||| ||| ||| |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
8265916 |
aaactaacactttcttgtagaacaagctaacttcctaactaactagttttctaacaaaatctcaactaacttgcttaggtggcagttatgaattaattct |
8265817 |
T |
|
| Q |
203 |
taa |
205 |
Q |
| |
|
||| |
|
|
| T |
8265816 |
taa |
8265814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 239 - 535
Target Start/End: Complemental strand, 3461687 - 3461391
Alignment:
| Q |
239 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacc |
338 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||||| ||||||| ||||||||||| ||||||||||| | ||||||||| || ||||| ||||| |||| | |
|
|
| T |
3461687 |
aaaaacaccaagttcctttctcaagaattcaaatatgtcaagctttactgcctttgtaaaaccatcagcaagttgcagttctgtggggcaatagtgcagc |
3461588 |
T |
|
| Q |
339 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgg |
438 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| || || || |||||| |||| |||||||| |||| ||||||| |
|
|
| T |
3461587 |
tcaatcattccattagtcacatgctctctaataaaatggaatatggtctcaatgtgtttactcctgccatgtaagattggattctttacaagacttatgg |
3461488 |
T |
|
| Q |
439 |
aagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaa |
535 |
Q |
| |
|
||||| || |||||| | || ||||||||||||| ||||||||| |||| ||||||||||||||||| |||| | | ||||||||||||||| |
|
|
| T |
3461487 |
ctgatttattatcaattttcagtgttagaggcttcatcacttcacacttaaattccttcatcactgaatccaaccatagtgcttgacaagtagcaaa |
3461391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 239 - 547
Target Start/End: Complemental strand, 302240 - 301932
Alignment:
| Q |
239 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacc |
338 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||||||||| || | ||| || ||||||||||| | |||||| || | ||||| || || |||| | |
|
|
| T |
302240 |
aaaaacacctaatttcttcctcaagaattcaaatctgtcaagcttcattgcttttgtaaaaccatcagcaagttgtagttttgtggggcagtagtgcagc |
302141 |
T |
|
| Q |
339 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgg |
438 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||||||||||||||||| || || || ||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
302140 |
tcaatcattccattagtcacctgctctcaaatgaaattgaatctggtctcaatgtgtttactcctgccatgtgagattagattctttgcaagacttgtgg |
302041 |
T |
|
| Q |
439 |
aagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgt |
538 |
Q |
| |
|
||||||||||||||| | || ||||||||||||| ||||||||| ||||| |||||||||||||||| | || | | |||||||||||||||||| |
|
|
| T |
302040 |
ctgatttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagttccttcatcactgaattcagccataatgcttgacaagtagcaaatgt |
301941 |
T |
|
| Q |
539 |
tcttgcaat |
547 |
Q |
| |
|
|| |||||| |
|
|
| T |
301940 |
tcctgcaat |
301932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 242 - 573
Target Start/End: Original strand, 38099394 - 38099725
Alignment:
| Q |
242 |
aacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctca |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| || | ||||| ||||| |||| || || | || || || ||||||||||| | ||| |
|
|
| T |
38099394 |
aacaccaagtttcttcctcaaaaattcaaatatgccaagcttcaaagcctttgtaaagccatatgctagctacaattctgtaggacaatattgtagttca |
38099493 |
T |
|
| Q |
342 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaag |
441 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||| || ||||||||| ||||||| ||||||| | |
|
|
| T |
38099494 |
atcataccattagtcactcgctccctaatgaaatggaatctagtctcaatgtgtttgattctaccatgagaaataggattcctagcaagacttatggttg |
38099593 |
T |
|
| Q |
442 |
atttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttct |
541 |
Q |
| |
|
||||||||||||| | || |||||||| |||| ||||||||| || ||||| ||||||| |||||| | | || || |||||| | ||||||| | |
|
|
| T |
38099594 |
atttgttgtcaatcttcagtgttagaggtttcatcacttcacacttgagctctttcatcattgaatccagcaacagagcttgacatattgcaaatgcacc |
38099693 |
T |
|
| Q |
542 |
tgcaatatacccagcttcacagaatgagagtg |
573 |
Q |
| |
|
|||||| ||| || ||||||| |||||||||| |
|
|
| T |
38099694 |
tgcaatgtactcaacttcacataatgagagtg |
38099725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 6962263 - 6962074
Alignment:
| Q |
18 |
taaaactgaaagagaaga--atagagacattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttata-------aacta |
108 |
Q |
| |
|
|||||||||||||||| | || |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| || || |
|
|
| T |
6962263 |
taaaactgaaagagaaaataatggagaaattatgcttgcaatgtgaatctcatta----gt---tgtacacattacaaagcctttatataggcaaaatta |
6962171 |
T |
|
| Q |
109 |
acacttgcttgttgaacaagctaattccctaactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaattatttcttaa |
205 |
Q |
| |
|
|||||||||||| ||||||| | | | ||||||||||||||||||||| ||| | | ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6962170 |
acacttgcttgtagaacaagatgacttcctaactaactagttttgtaacaaaatttcaactaactaacttaggtggcagttatgaattatttcttaa |
6962074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 239 - 357
Target Start/End: Original strand, 39190879 - 39190997
Alignment:
| Q |
239 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacc |
338 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||||||||| || ||||| || | ||||||||| | ||||||||| || ||||| || || |||| | |
|
|
| T |
39190879 |
aaaaacacctaatttcttcctcaagaattcaaatctgtcaagcttcactgcttttgcaaaaccatcagcaagttgcagttctgtggggcagtagtgcagc |
39190978 |
T |
|
| Q |
339 |
tcaatcattccattagtca |
357 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39190979 |
tcaatcattccattagtca |
39190997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 40498141 - 40498053
Alignment:
| Q |
12 |
aaactgtaaaactgaaagagaagaatagagacattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttt |
100 |
Q |
| |
|
||||| ||||| ||||||||| ||| |||| |||||| |||||||||||||||||||||||| | || | |||| |||||||||||| |
|
|
| T |
40498141 |
aaactataaaaatgaaagagatgaagggagaaattatgtttgcaatgtgaatctcattaagaattaaagttgcacaatacaaagccttt |
40498053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 38099133 - 38099183
Alignment:
| Q |
18 |
taaaactgaaagagaa--gaatagagacattatgcttgcaatgtgaatctc |
66 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||||||||||||||||||| |
|
|
| T |
38099133 |
taaaactgaaagagaaaagaatggagaaattatgcttgcaatgtgaatctc |
38099183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 239 - 479
Target Start/End: Original strand, 50778358 - 50778598
Alignment:
| Q |
239 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacc |
338 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||| ||||| | ||||||||| || ||||| ||||| |||| | |
|
|
| T |
50778358 |
aaaaacaccaagttccttcctaaaaaattcaaatctgtcaagctttactgcctttgtaaagccatcagcaagttgcagttctgtggggcaatagtgcagc |
50778457 |
T |
|
| Q |
339 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgg |
438 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
50778458 |
tcaatcattcaattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttactcctgccatgtgagattggattctttgcaagacttatgg |
50778557 |
T |
|
| Q |
439 |
aagatttgttgtcaattctgagggttagaggcttcaccact |
479 |
Q |
| |
|
||||| || |||||| | || ||||||||||||| |||| |
|
|
| T |
50778558 |
ctgatttattatcaattttcagtgttagaggcttcatcact |
50778598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 25590718 - 25590894
Alignment:
| Q |
35 |
aatagagacattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttat-------aaactaacacttgcttgttgaacaa |
127 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | || |
|
|
| T |
25590718 |
aatagagagattatgcttgcaatgtgaatctcattaagaagtgaatgtacacgttacaaagcctttatataagcaaaactaacacttgcttgtaacataa |
25590817 |
T |
|
| Q |
128 |
gctaattccctaactaactag-ttttgtaaaaaattcttaactaactagctt-aggtggcagttatgaattatttct |
202 |
Q |
| |
|
||| || |||||||||||| |||| ||| |||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
25590818 |
cctatctcactaactaactagtttttttaacaaattcttaactaactaggttaaggtggcagttatgaattatttct |
25590894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 51119573 - 51119534
Alignment:
| Q |
61 |
aatctcattaagaagtgaatgtacacattacaaagccttt |
100 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
51119573 |
aatctcattaagaattaaatgtacacattacaaagccttt |
51119534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 251 - 573
Target Start/End: Original strand, 18641214 - 18641536
Alignment:
| Q |
251 |
tttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctcaatcattcca |
350 |
Q |
| |
|
||||||||||| |||||||||| ||||||| || ||||| || ||||| ||||| | |||||| || || ||||| || || |||| ||||||||||||| |
|
|
| T |
18641214 |
tttcttcctcacaaattcaaatttgtcaagcttcactgcatttgtaaagccatcggcaagttgtagttctgtggggcagtagtgcagctcaatcattcca |
18641313 |
T |
|
| Q |
351 |
ttagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgt |
450 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| | ||| || ||||| ||||| |||| |||| |||||||||| |||||||| |||||||||| |
|
|
| T |
18641314 |
ttagtcacttgctccctaatgaaatggaatctggtctctaagtgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgt |
18641413 |
T |
|
| Q |
451 |
caattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaatata |
550 |
Q |
| |
|
|||| | || || |||||||| | ||||||||| || ||||| |||||||||||||| | || | | |||||||||||||||||||| || ||| || |
|
|
| T |
18641414 |
caatcttcagtgtcagaggctttatcacttcacacttgagctctttcatcactgaatccagccataatgcttgacaagtagcaaatgttcctgtaatgta |
18641513 |
T |
|
| Q |
551 |
cccagcttcacagaatgagagtg |
573 |
Q |
| |
|
| || |||||||| |||| |||| |
|
|
| T |
18641514 |
ctcaacttcacaggatgatagtg |
18641536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 51810714 - 51810511
Alignment:
| Q |
1 |
aatagcaaaataaa-ctgtaaaactgaaagagaagaatagagacattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctt |
99 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||| || ||||||||||||||| |
|
|
| T |
51810714 |
aatagcaaaataaaactgtaaa-ctgaaagagaagaataaagatattatgcttgcaatgtgaatctcaatgagaagtgaatttatacattacaaagcctt |
51810616 |
T |
|
| Q |
100 |
tat-------aaactaacacttgcttgttgaacaagctaattccctaactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatg |
192 |
Q |
| |
|
||| ||||||||| |||||||| | |||||||| || || | ||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
51810615 |
tatataggcaaaactaacatttgcttgtagcacaagctatctcactgattaactagttttgtaaccaattcttaactaactagcttaggtggcagtcatg |
51810516 |
T |
|
| Q |
193 |
aatta |
197 |
Q |
| |
|
||||| |
|
|
| T |
51810515 |
aatta |
51810511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 462 - 569
Target Start/End: Complemental strand, 34983027 - 34982920
Alignment:
| Q |
462 |
gttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaatatacccagcttcac |
561 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||| || | || |||| | | |||||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
34983027 |
gttagaggcttcaccacttcacacttgagctctttcatcgctaattccaaccataaaacttgacaagtagcaaatgttcatgcaatatactcaacttcac |
34982928 |
T |
|
| Q |
562 |
agaatgag |
569 |
Q |
| |
|
|| ||||| |
|
|
| T |
34982927 |
aggatgag |
34982920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 293
Target Start/End: Complemental strand, 1663318 - 1663164
Alignment:
| Q |
137 |
ctaactaactagttttgtaa-aaaattcttaactaactagcttaggtggcagttatgaattatttcttaagactcccctttaattcttaactggtgaaca |
235 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||| ||| | ||||||||||| |||| |||||| ||| || ||||||| |||||| |||| |
|
|
| T |
1663318 |
ctaactaagaagttttgtaacaaaattct-aactaacttgct-acatggcagttatggattaaatcttaacgctcgcccttaattcataactgctgaatg |
1663221 |
T |
|
| Q |
236 |
ttgaaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgcctta |
293 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||||| |||| ||||| ||||||| |
|
|
| T |
1663220 |
ttgagaaacaccaagtttcttcct-aaaaactcaaatctatcaaattttaatgcctta |
1663164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 1663412 - 1663369
Alignment:
| Q |
57 |
tgtgaatctcattaagaagtgaatgtacacattacaaagccttt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
1663412 |
tgtgaatctcattaagaattgaatgtacaccttacaaagacttt |
1663369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 424
Target Start/End: Complemental strand, 34983188 - 34983072
Alignment:
| Q |
308 |
aagttgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctacca |
407 |
Q |
| |
|
||||||||||||| | |||||||| | ||| ||| ||||||||| || || | ||| ||||| |||||||| |||||| |||||||||| || ||| |
|
|
| T |
34983188 |
aagttgcagctcaattggacaatacttcacatcatgcattccatttgtaacttcctctctaataaaatggaacacagtctcagtgtgcttgctcctgcca |
34983089 |
T |
|
| Q |
408 |
tgtgagataggattctt |
424 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
34983088 |
tgagaaataggattctt |
34983072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 242 - 588
Target Start/End: Complemental strand, 49221 - 48875
Alignment:
| Q |
242 |
aacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctca |
341 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| ||||||| || ||||| || ||||||||||| | |||||| || || ||||| || || |||| |||| |
|
|
| T |
49221 |
aacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcaactca |
49122 |
T |
|
| Q |
342 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaag |
441 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||| |||||| || ||||| ||||| |||| | |||||||||||| |||||| | |
|
|
| T |
49121 |
atcattccattagtcacatgctctctaatgaaatggaatctggtcgaaatgtgtttacttctgccatgagagacaatattcttagcaagacttatgcctg |
49022 |
T |
|
| Q |
442 |
atttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttct |
541 |
Q |
| |
|
||||||||||||| | || || |||||||| ||||||||||| || ||||| ||||||||| |||| | || | ||||| ||||||||||| |||| |
|
|
| T |
49021 |
atttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagctctttcatcactaaatccagccataatgtttggcaagtagcaaaagttcc |
48922 |
T |
|
| Q |
542 |
tgcaatatacccagcttcacagaatgagagtgcagtaattggttgct |
588 |
Q |
| |
|
|| || ||| | ||||||||| |||| |||||||| | |||||||| |
|
|
| T |
48921 |
agctatgtactctgcttcacaggatgaaagtgcagtgactggttgct |
48875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 242 - 588
Target Start/End: Complemental strand, 28249059 - 28248713
Alignment:
| Q |
242 |
aacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctca |
341 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| ||||||| || ||||| || ||||||||||| | |||||| || || ||||| || || |||| |||| |
|
|
| T |
28249059 |
aacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcaactca |
28248960 |
T |
|
| Q |
342 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaag |
441 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||| |||||| || ||||| ||||| |||| | |||||||||||| |||||| | |
|
|
| T |
28248959 |
atcattccattagtcacatgctctctaatgaaatggaatctggtcgaaatgtgtttacttctgccatgagagacaatattcttagcaagacttatgcctg |
28248860 |
T |
|
| Q |
442 |
atttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttct |
541 |
Q |
| |
|
||||||||||||| | || || |||||||| ||||||||||| || ||||| ||||||||| |||| | || | ||||| ||||||||||| |||| |
|
|
| T |
28248859 |
atttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagctctttcatcactaaatccagccataatgtttggcaagtagcaaaagttcc |
28248760 |
T |
|
| Q |
542 |
tgcaatatacccagcttcacagaatgagagtgcagtaattggttgct |
588 |
Q |
| |
|
|| || ||| | ||||||||| |||| |||||||| | |||||||| |
|
|
| T |
28248759 |
agctatgtactctgcttcacaggatgaaagtgcagtgactggttgct |
28248713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 47 - 353
Target Start/End: Original strand, 29010823 - 29011122
Alignment:
| Q |
47 |
atgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcc-tttataaactaaca-----cttgcttgttgaacaagctaattccctaa |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | || | ||||||||| | |||||||| || |||| |
|
|
| T |
29010823 |
atgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaa |
29010922 |
T |
|
| Q |
141 |
ctaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaattatttcttaagactcccctttaattcttaactggtgaacattgaa |
240 |
Q |
| |
|
||||| ||| || ||||||||| || || ||||||||||| |||| |||||| ||||| ||||||| |||||| |||| | || | |
|
|
| T |
29010923 |
ctaac-----------aaattttctaactaacttgc-taaatggcagttatggattaaatcttaatactccatcttaattcataactgttgaatactg-a |
29011009 |
T |
|
| Q |
241 |
aaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagttgcagctcagtgggacaatattgcacctc |
340 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| |||||||||| | || ||||||||||||| || ||||||||| || || |||||| | |||| ||| |
|
|
| T |
29011010 |
aaacaccaagtttcttcctaaaaaacttaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcagttctgtaggacaaaactgcagctc |
29011109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 472 - 579
Target Start/End: Original strand, 29011192 - 29011299
Alignment:
| Q |
472 |
tcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagag |
571 |
Q |
| |
|
|||| |||||||| || || || |||||||||||||| |||| || || |||||| ||||||||| ||| |||||||||| |||||||||| ||||||| |
|
|
| T |
29011192 |
tcacaacttcacacttgagttcattcatcactgaatccaaccacaaagcttgacatgtagcaaatattcctgcaatatactcagcttcacaagatgagag |
29011291 |
T |
|
| Q |
572 |
tgcagtaa |
579 |
Q |
| |
|
|||||||| |
|
|
| T |
29011292 |
tgcagtaa |
29011299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 11187017 - 11187084
Alignment:
| Q |
239 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctg |
306 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| || |||||| ||||| || ||||||||||||| |
|
|
| T |
11187017 |
aaaaatacctagtttcttcctcaaaaattcaaatacgtgaagtttcactgcttttgtaaaaccatctg |
11187084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 396 - 547
Target Start/End: Original strand, 2420 - 2571
Alignment:
| Q |
396 |
ttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctcct |
495 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||||||| || |||||||||||||| | ||||||||||||| ||||||||| |||||||| | |
|
|
| T |
2420 |
ttgcttctaccatgagagatgggattcttgacaaggcttatggctgacttgttgtcaattctcaatgttagaggcttcatcacttcacacttaagctctt |
2519 |
T |
|
| Q |
496 |
tcatcactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaat |
547 |
Q |
| |
|
|||| ||||||| |||| || || |||||| ||||||||||| | |||||| |
|
|
| T |
2520 |
tcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaat |
2571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 2190 - 2242
Alignment:
| Q |
16 |
tgtaaaactgaaagagaagaatagagacattatgcttgcaatgtgaatctcattaa |
71 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||||| |||||||||||||||||| |
|
|
| T |
2190 |
tgtaaaactgaaagagaa---tatagagattatgcttacaatgtgaatctcattaa |
2242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 59428 - 59528
Alignment:
| Q |
1 |
aatagcaaaataaact-gtaaaactgaaagagaagaatagagacattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctt |
99 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| | |||| ||||||||||| |
|
|
| T |
59428 |
aatagcaaaataaagttgtaaaactgaaaaagaagaatagagtgattatgcttgcaatgtgaatctcattaagacttgaagttgcacaatacaaagcctt |
59527 |
T |
|
| Q |
100 |
t |
100 |
Q |
| |
|
| |
|
|
| T |
59528 |
t |
59528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0217 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 2896 - 2844
Alignment:
| Q |
375 |
tggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagc |
427 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||| |||||||| ||||| |
|
|
| T |
2896 |
tggaatctagtctcaatgtgtttgcttttaccatgtgcaataggatttttagc |
2844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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