View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3660_low_3 (Length: 553)
Name: NF3660_low_3
Description: NF3660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3660_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 535
Target Start/End: Original strand, 15191469 - 15191994
Alignment:
| Q |
11 |
cacagatccaccgcaccaaccattattgaaccactgtgcagtgaaacactgtcgttatgccattgaaccgcaaaaaaccattaacccgcacaaactactc |
110 |
Q |
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| T |
15191469 |
cacagatccactgtacccaccattatcgaattattgtgcaatgaaacactgttttcatgccattgaaccgcaaaaaaccattaacccgcacaaactagtg |
15191568 |
T |
|
| Q |
111 |
cctgctatcattgcttggacccacacaaactcttcaattttttat-aattatacaacaattagttgattccacaagctcgcggaaagaaaagcaagtaaa |
209 |
Q |
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| T |
15191569 |
cctgctatcattgcttggacccgcacaaactcttcaattttttattaattatacaacaattagttgattccacaagctcgcggaaagaaaagcaagtaaa |
15191668 |
T |
|
| Q |
210 |
tttcaaacacagatcaatcaaacttcaatctaaacatgacctgatacatctactatctactattctatgcaaaacagaagctttctaactgaagtacaca |
309 |
Q |
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| T |
15191669 |
tttcaaacacagattaatcaaacttcaatctaaacatgacctgatacgtctactatctactattctatgcaaaacagaagctttctaactgaagtacaca |
15191768 |
T |
|
| Q |
310 |
tcaaaagttaaaatatcagcaataatgattcataatttaaccaaagaagaaaggnnnnnnnnnnnnnccgaacttgcaatgacgaagagactcatagcgt |
409 |
Q |
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| T |
15191769 |
tcaaaagttaaaatatcagcaataatgattcataatttaaccaaagaagaaaggaaaaagaaaaaaaccgaacttgcaatgacgaagagactcgtagcgt |
15191868 |
T |
|
| Q |
410 |
tcttgctcattcataacagttttacccttgtacttgtgtgtgatctcatcactgcagcatccaacaaggagatatgtgtttggaaaccttcaattaacaa |
509 |
Q |
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| T |
15191869 |
tcttgctcattcataacagttttacccttgtacttgtgtgtgatctcatcactgcagcatccaacaaggagatatgtattcggaaaccttcaattaacaa |
15191968 |
T |
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| Q |
510 |
acaacaaaaactatgatcataacatg |
535 |
Q |
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| T |
15191969 |
acaacaaaaactattatcataacatg |
15191994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 381 - 479
Target Start/End: Complemental strand, 24188708 - 24188610
Alignment:
| Q |
381 |
acttgcaatgacgaagagactcatagcgttcttgctcattcataacagttttacccttgtacttgtgtgtgatctcatcactgcagcatccaacaagga |
479 |
Q |
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| T |
24188708 |
acttgcagtgacgaagggactcatagcgttcttgctcattcataacagttttacccttttacttgtgtgtgatctcatcactgcagcatccaacaagga |
24188610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 504
Target Start/End: Original strand, 36915998 - 36916121
Alignment:
| Q |
381 |
acttgcaatgacgaagagactcatagcgttcttgctcattcataacagttttacccttgtacttgtgtgtgatctcatcactgcagcatccaacaaggag |
480 |
Q |
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||||||| ||||| ||||||||||| ||||| | ||| ||||||| ||||| || || ||||| ||||| | | |||| ||||||||||||||||| || |
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| T |
36915998 |
acttgcagtgacggagagactcataacgttcatcttcagtcataaccgttttgcctttatacttatgtgtcaccgcatcgctgcagcatccaacaagaag |
36916097 |
T |
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| Q |
481 |
atatgtgtttggaaaccttcaatt |
504 |
Q |
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||| ||||| ||||| || ||||| |
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| T |
36916098 |
atacgtgttcggaaatctacaatt |
36916121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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