View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3660_low_6 (Length: 427)
Name: NF3660_low_6
Description: NF3660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3660_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 407
Target Start/End: Original strand, 39460104 - 39460492
Alignment:
| Q |
20 |
tttcctacactcctatttcctatataaatatacaagtatatcaaagaacaattcaaaaaacagtaacttac-gagtaagggtatatcctgtgctccaaga |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39460104 |
tttcctacactcctatttcctaaataaatatacaagtatatcaaagaacaattcaaaaaacagtaacttacagagtaagggtatatcctgtgctccaaga |
39460203 |
T |
|
| Q |
119 |
tgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataaccgcct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||| ||||| |
|
|
| T |
39460204 |
tgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataagcgcct |
39460303 |
T |
|
| Q |
219 |
ccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcatcaacctt |
318 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
39460304 |
ccgaattactgtcctagtcatgaaactcccatacacatcagaatccgatgttaacactaaatcacttcccacttctgattctctcgacatcatcaacctt |
39460403 |
T |
|
| Q |
319 |
ccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaacaagccgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
39460404 |
ccagaagtttctcttcccccaaacatcgaaccaacttccagaatgatggctttcctcgaagctcagaaatcaaacgtcaaacaagccgt |
39460492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 112 - 410
Target Start/End: Original strand, 39475453 - 39475754
Alignment:
| Q |
112 |
tccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgata |
211 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |||||||||| |||| |||||| || ||||||| |
|
|
| T |
39475453 |
tccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgata |
39475552 |
T |
|
| Q |
212 |
accgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcat |
311 |
Q |
| |
|
|||| |||||| ||||||| |||| || ||| ||||| ||| |||| || ||||| ||||||||||| ||||| | ||| || |||||| ||||||| |
|
|
| T |
39475553 |
accgtctccgagtaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcat |
39475652 |
T |
|
| Q |
312 |
caaccttccagaagtttctcttcccccaaacatcgaaccaagt---tccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaacaagccgtc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||| || || |||| ||| ||||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
39475653 |
caaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtc |
39475752 |
T |
|
| Q |
409 |
tc |
410 |
Q |
| |
|
|| |
|
|
| T |
39475753 |
tc |
39475754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 102 - 343
Target Start/End: Original strand, 39450937 - 39451178
Alignment:
| Q |
102 |
tatcctgtgctccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaaca |
201 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||| || |||||| |||||| |
|
|
| T |
39450937 |
tatcctgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatc |
39451036 |
T |
|
| Q |
202 |
aaccgtgataaccgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctc |
301 |
Q |
| |
|
|| ||||||||||| |||||| ||||||| |||| || ||| ||||| | | | || || ||||| ||||||||||| ||||| | ||| ||||||| |
|
|
| T |
39451037 |
aatcgtgataaccgtctccgagtaactgttttagttatcaaattcccacatatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctc |
39451136 |
T |
|
| Q |
302 |
tcgacatcatcaaccttccagaagtttctcttcccccaaaca |
343 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39451137 |
tcaacatcatcaaccttccagaagtttctcttcctccaaaca |
39451178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 90 - 411
Target Start/End: Complemental strand, 39464778 - 39464457
Alignment:
| Q |
90 |
cgagtaagggtatatcctgtgctccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcg |
189 |
Q |
| |
|
|||||||| | || ||||||||| ||| ||||||||||||||||| ||||||||||||||||||| | | ||||||| ||| |||||||||||||| |
|
|
| T |
39464778 |
cgagtaagtgcatgtcctgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcg |
39464679 |
T |
|
| Q |
190 |
aagattctaacaaaccgtgataaccgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttccca |
289 |
Q |
| |
|
||| |||||| |||||||||||||| ||||||||||| || ||||||| ||||||||| | || || |||||||||| |||||||||| |||||| |
|
|
| T |
39464678 |
aagcttctaatcaaccgtgataaccgtctccgaataaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattccca |
39464579 |
T |
|
| Q |
290 |
cctccgattctctcgacatcatcaaccttccagaagtttctcttcccccaaacatc-gaaccaagttccagaatgaaggctttcctcgaagctcagaaac |
388 |
Q |
| |
|
|| |||||||| | |||||||||||||||||||||||||||||| |||| || || ||| ||||| ||||| ||| |||| || ||||| |||| |
|
|
| T |
39464578 |
tatctgattctcttaatgtcatcaaccttccagaagtttctcttcccc-aaacctctgatccaggttccgctatgaacgctctccttgatgctcacaaac |
39464480 |
T |
|
| Q |
389 |
caaacatcaaacaagccgtctct |
411 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
39464479 |
caaacgtcaaacaagccgtctct |
39464457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 104 - 403
Target Start/End: Original strand, 39471975 - 39472274
Alignment:
| Q |
104 |
tcctgtgctccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||| | | | | ||| ||| ||| | || |||||||||||| |||||| || |
|
|
| T |
39471975 |
tcctgtgctccaagatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaa |
39472074 |
T |
|
| Q |
204 |
ccgtgataaccgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctc |
303 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| || ||| ||||| ||| ||| || ||||||| |||||||||| ||||| | ||||||||| ||| |
|
|
| T |
39472075 |
ccgtgataaccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactc |
39472174 |
T |
|
| Q |
304 |
gacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaacaag |
403 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| || | | || || |||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
39472175 |
cacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggtccctctatgactgcgctcctcgaagctcagaaaccaaacgtcaaacaag |
39472274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 55 - 404
Target Start/End: Complemental strand, 39471040 - 39470687
Alignment:
| Q |
55 |
gtatatcaaagaacaattcaaa-aaacagtaacttac---gagtaagggtatatcctgtgctccaagatgaagaaagcagaagttgtgtttatccctttt |
150 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| || ||||||| |||| || |||||||||| |||||||||| ||||| ||||||||||||||| |
|
|
| T |
39471040 |
gtatatcaaagaacaattcagagaaacagtaactcacactgagtaagtgtatgtcttgtgctccaacatgaagaaagtggaagtggtgtttatccctttt |
39470941 |
T |
|
| Q |
151 |
cccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataaccgcctccgaataactgtcctagtcatgaaactcccat |
250 |
Q |
| |
|
|||| | | ||||||| ||| || | ||||| || ||| |||||| |||| ||||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
39470940 |
cccgctgtaggtcatctagtttctgccttagagttcgccaagcttctaatcaaccatgataaccgcctctgaataactgtcttagtcatgaaattcccac |
39470841 |
T |
|
| Q |
251 |
acacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaacc |
350 |
Q |
| |
|
|||| || |||| ||||| || ||||||| |||||| ||| ||||||||| | ||||||||||||||||||||||| ||| ||||| | || || |
|
|
| T |
39470840 |
acactgcagaatctgatgtctacgctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctgatcc |
39470741 |
T |
|
| Q |
351 |
aagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaacaagc |
404 |
Q |
| |
|
| |||| ||||| ||| ||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
39470740 |
aggttcggatatgaacgctctcctcgaagctcataaagcaaacgtcaaacaagc |
39470687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 66 - 404
Target Start/End: Original strand, 39486363 - 39486704
Alignment:
| Q |
66 |
aacaattcaaaaaacagtaacttac-gagtaagggtatatcctgtgctccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagcca |
164 |
Q |
| |
|
|||||||||||||||||| ||| || ||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||| || ||| | || |
|
|
| T |
39486363 |
aacaattcaaaaaacagtcactcacagagtaagtgtatatcca----tccaagatgaagaaagcagaagtggtgattatcccttcacctggtgttggtca |
39486458 |
T |
|
| Q |
165 |
tctagattccacccttgagtttgcgaagattctaacaaaccgtgataaccgcctccgaataactgtcctagtcatgaaactcccatacacaacaaa---- |
260 |
Q |
| |
|
||||| |||||||||||| ||||| ||| |||||| |||||||||||||| ||||||||||| || | ||||| ||| ||||| |||| ||| | |
|
|
| T |
39486459 |
tctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgtctccgaataaccatcttggtcatcaaattcccacacaccacagatgac |
39486558 |
T |
|
| Q |
261 |
-atc-cgatgttaacactaaatctcttcccacctccgattctctcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagttcca |
358 |
Q |
| |
|
|| |||||| |||| ||||| ||||||| |||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||| ||| |
|
|
| T |
39486559 |
gatgtcgatgtctacacaaaatcccttcccatttccgattctctccaggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttg |
39486658 |
T |
|
| Q |
359 |
gaatgaaggctttcctcgaagctcagaaaccaaacatcaaacaagc |
404 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
39486659 |
tcatgaacgctctccttgaagctcagaaaccaaacgtcaaacaagc |
39486704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 118 - 343
Target Start/End: Original strand, 39454592 - 39454817
Alignment:
| Q |
118 |
atgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataaccgcc |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||| ||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||| | |
|
|
| T |
39454592 |
atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc |
39454691 |
T |
|
| Q |
218 |
tccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcatcaacct |
317 |
Q |
| |
|
||||||||||||| ||||| | ||| | ||| || | || || | ||||| ||| |||||||||||| | ||||||||| || |||||||||||| |
|
|
| T |
39454692 |
tccgaataactgttttagtcctcaaatttccacacgccactgaaactgatgtatacagtaaatctcttccaatctccgattcaatccgcatcatcaacct |
39454791 |
T |
|
| Q |
318 |
tccagaagtttctcttcccccaaaca |
343 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
39454792 |
tccagaatgctctcttcccccaaaca |
39454817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 112 - 410
Target Start/End: Complemental strand, 39458516 - 39458218
Alignment:
| Q |
112 |
tccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgata |
211 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||| ||| || ||| | ||||||| ||||||||| || ||||| ||| |||||| |||||||||| |
|
|
| T |
39458516 |
tccaggatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgata |
39458417 |
T |
|
| Q |
212 |
accgcctccgaataactgtcctagtcatgaaactcccatacacaacaaaatccgatgttaacactaaatctcttcccacctccgattctctcgacatcat |
311 |
Q |
| |
|
|||| |||||||||||| || | ||||||||| | ||| |||||||| || ||||| |||||||||| ||| ||| | ||||||||| |||| | |
|
|
| T |
39458416 |
accgtctccgaataactatcttggtcatgaaatttccacacacaacagaaatagatgtctacactaaatcccttgccatcgacgattctcttaacattgt |
39458317 |
T |
|
| Q |
312 |
caaccttccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaacaagccgtctc |
410 |
Q |
| |
|
| ||||||||||| |||||||||||||||| | | || |||| | ||| || | ||||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
39458316 |
cgaccttccagaatgttctcttcccccaaactccaatataacttccggcatggtggatctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctc |
39458218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 39480320 - 39480451
Alignment:
| Q |
112 |
tccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgata |
211 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||||| || ||| | ||||||| |||||||||||| || |||||| |||||| |||||||||| |
|
|
| T |
39480320 |
tccaggatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgata |
39480419 |
T |
|
| Q |
212 |
accgcctccgaataactgtcctagtcatgaaa |
243 |
Q |
| |
|
|||| |||||||||||||| | ||||||||| |
|
|
| T |
39480420 |
accgtctccgaataactgttttggtcatgaaa |
39480451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 43312730 - 43312626
Alignment:
| Q |
117 |
gatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagtttgcgaagattctaacaaaccgtgataaccgc |
216 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| ||| ||| | | ||| ||| ||||||||||||||||| ||| |||| | |||||||||||||| |
|
|
| T |
43312730 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgt |
43312631 |
T |
|
| Q |
217 |
ctccg |
221 |
Q |
| |
|
||||| |
|
|
| T |
43312630 |
ctccg |
43312626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 39450857 - 39450902
Alignment:
| Q |
30 |
tcctatttcctatataaatatacaagtatatcaaagaacaattcaaaaaa |
79 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
39450857 |
tcctatttcctatataaataaaca----tatcaaagaacaattcaaaaaa |
39450902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 39451205 - 39451245
Alignment:
| Q |
367 |
gctttcctcgaagctcagaaaccaaacatcaaacaagccgt |
407 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39451205 |
gctctcctcgaagctcagaaaccaaatgtcaaacaagccgt |
39451245 |
T |
|
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