View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3660_low_7 (Length: 418)
Name: NF3660_low_7
Description: NF3660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3660_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 37259644 - 37259254
Alignment:
| Q |
16 |
agagaagcatacctggaaaacgaacttgccaacatgtgggttcttgtggcaaagctaaaaaagtcacaaggagcagaaaacgatgtttcagggtcgacta |
115 |
Q |
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| T |
37259644 |
agagaagcatacctggaaaacgaacttgccaacatgtgggttcttgtggcaaagctaaaaaagtcacaaggagcagaaaacgatgtttcagggtcgacta |
37259545 |
T |
|
| Q |
116 |
aagagagtttgcaatttgatggttttgatatttgatgtgattttgtatagtggctttttaatttgatcaatcattacaatttgtttaaagtaggagtggc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37259544 |
aagagagtttgcaatttgatggttttgatatttgatgtgattttgtatagtggctttttaatttgatcaatcattacaatttgtttaaagtaggagtggc |
37259445 |
T |
|
| Q |
216 |
ttgagggaaagctttgtaaagactgttagcaggaaagtttgtttttctcttcccctccatcaccatcctttttggtccatagctagggcttctcatttgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37259444 |
ttgagggaaagctttgtaaagactgttagcaggaaagtttgtttttctcttcccctccatcaccatcctttttggtccgtagctagggcttctcatttgt |
37259345 |
T |
|
| Q |
316 |
acatccaaagaactcactttccgctttcttttccccagccttc-nnnnnnnncttcgttcctccgaatggtgtgctaatttggtccctttt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37259344 |
acatccaaagaactcactttccgctttcttttccccagccttcttgttttttcttcgttcctccgaatggtgtgctaatttggtccctttt |
37259254 |
T |
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