View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3660_low_9 (Length: 335)
Name: NF3660_low_9
Description: NF3660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3660_low_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 40949057 - 40949370
Alignment:
| Q |
17 |
atatagttttcataaaagatatatcattctttagtttaaatattattcatcatacttaatagtaataaaattctccatcctattgattaagtaatttgtg |
116 |
Q |
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| T |
40949057 |
atatagttttcataaaagatatatcattctttagtttaaatattattcatcatacttaatagtaataaaattctcgatcctattgattaagtaatttgtg |
40949156 |
T |
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| Q |
117 |
aaaatcttgtcaaagtaatgtacaacatgttttatcccataaaatagggtcgacttcatggatcatattatgacataatgttatatcacaaaccatattt |
216 |
Q |
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| T |
40949157 |
aaaatcttgtcaaagcaatgtacaacatgttttatcccataaaatagggtcgacttcatggatcatattatgacataatgttgtatcataaaccatattt |
40949256 |
T |
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| Q |
217 |
taatccttattttacattgtactcaagcaatatagtgcattagtttcagacaaagaccnnnnnnncccttccaataagcaaggagaaaggataagcatca |
316 |
Q |
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| T |
40949257 |
taatccttat-----attgtactcaagcaatacagtgcattagtttccgacaatgacttttttttcccttccaataagcaaggagaaaggacaagcatca |
40949351 |
T |
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| Q |
317 |
agaggacacatcgacaccc |
335 |
Q |
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| T |
40949352 |
agagaacacatcgacaccc |
40949370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 40946304 - 40946481
Alignment:
| Q |
23 |
ttttcataaaagatatatcattctttagtttaaatattattcatcatacttaatagtaataaaattctccatcctattgattaagtaatttgtgaaaatc |
122 |
Q |
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| T |
40946304 |
ttttcacaaaagatatatcattctttagtttaaatattattcatcata----------ataaaattctcaatcctattgattaagtaattttcgaaaatc |
40946393 |
T |
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| Q |
123 |
ttgtcaaagtaatgtacaacat------gttttatcccataaaatagggtcgacttcatggatcatattatgacataatgttatatcac |
205 |
Q |
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| T |
40946394 |
ttgtcaaagatatgtacaacatattttatttttatcccataaaat-gggtcgcctttatcgatcatattatgacataatgttatatcac |
40946481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 9235297 - 9235244
Alignment:
| Q |
163 |
gggtcgacttcatggatcatattatgacataatgttatatcacaaaccatattt |
216 |
Q |
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| T |
9235297 |
gggtcggctacatggatcaaattatgccataatgttctatcataaaccatattt |
9235244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 39708683 - 39708630
Alignment:
| Q |
163 |
gggtcgacttcatggatcatattatgacataatgttatatcacaaaccatattt |
216 |
Q |
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| T |
39708683 |
gggtcgactacatggatcaaattacgacatagtgttctatcataaaccatattt |
39708630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 32170655 - 32170602
Alignment:
| Q |
163 |
gggtcgacttcatggatcatattatgacataatgttatatcacaaaccatattt |
216 |
Q |
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| T |
32170655 |
gggtcggctacatggatcaaattatgtcataatgttatatcatagaccatattt |
32170602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 54128629 - 54128576
Alignment:
| Q |
163 |
gggtcgacttcatggatcatattatgacataatgttatatcacaaaccatattt |
216 |
Q |
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| T |
54128629 |
gggtcgcctacatggatcaaattatgccataatgttctatcataaaccatattt |
54128576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 21769743 - 21769796
Alignment:
| Q |
163 |
gggtcgacttcatggatcatattatgacataatgttatatcacaaaccatattt |
216 |
Q |
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| T |
21769743 |
gggtcggctacatggatcaaattacgccataatgttctatcacaaaccatattt |
21769796 |
T |
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