View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3661_low_1 (Length: 564)
Name: NF3661_low_1
Description: NF3661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3661_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 130 - 374
Target Start/End: Complemental strand, 39513748 - 39513504
Alignment:
| Q |
130 |
atttaaaatctagttgttaaacatagactatattatttatttaaatatgtaaatatgaaataagtttttaagtatgttaacgattcatgtctgatttttg |
229 |
Q |
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| T |
39513748 |
atttgaaatctagttgttaaacatagactatattatttatttaaatatgtgtatatgaaataagtttttaagtatgctaacaattcaggtctgattttta |
39513649 |
T |
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| Q |
230 |
agaagattaaatttagaatttatattttgctgacaaggtggaacttaaatctaacaaagtttatttagtccgatctgatatgacaatatcatcatatcga |
329 |
Q |
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| T |
39513648 |
agaagatcaaatctagattttaaattttgctgacaaggcggaacttaaatctaacaaagtttatttagtacgatttgatatgacaatattatgatattga |
39513549 |
T |
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| Q |
330 |
ttaaattttgtcttgtacaatgtttgattgtaaaattgctctatg |
374 |
Q |
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| T |
39513548 |
ttaaattttgtcttgtacaatgtttgatcttaaagtttctctatg |
39513504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 39513892 - 39513768
Alignment:
| Q |
18 |
tatatgttgtcagactcacttaaatttcatgttaaatatcaaagtgaagctcattcacaatagtctattagcttattaatctagttgtgaaacatagaga |
117 |
Q |
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| T |
39513892 |
tatacgttttcagacttgctcaaatttcatgttaaatatcaaagtgaagttcattcacattagactattagcttattaatctagttgtcaaacatagac- |
39513794 |
T |
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| Q |
118 |
tcagtactatttatttaaaatctagtt |
144 |
Q |
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| T |
39513793 |
-cgttattatttatttaaaatctagtt |
39513768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 428 - 544
Target Start/End: Complemental strand, 39513497 - 39513381
Alignment:
| Q |
428 |
actaaatcacaacacaactttttgtctcaaatatttg--gttgaaaataccaaaatagtcttttgtcgacaaagatttataacaaaatattgttgaatac |
525 |
Q |
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| T |
39513497 |
actaaataacagcacaactttttgtctcaaatatatattgtcgaaaacaccaaaatagtcttttgtcgacaaaaatttataataaa--attattcaatat |
39513400 |
T |
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| Q |
526 |
cataaaaatttatattttt |
544 |
Q |
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| T |
39513399 |
cataaaaatttatattttt |
39513381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 458
Target Start/End: Original strand, 35335972 - 35336004
Alignment:
| Q |
426 |
tcactaaatcacaacacaactttttgtctcaaa |
458 |
Q |
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| T |
35335972 |
tcactaaagcacaacacaactttttgtctcaaa |
35336004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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