View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3661_low_3 (Length: 502)
Name: NF3661_low_3
Description: NF3661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3661_low_3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 502
Target Start/End: Complemental strand, 11059722 - 11059236
Alignment:
| Q |
17 |
accatatatattagtctcttaaatcttaatcaagttttttgaatgataatgaaggattaataaccttcatcgcctctcgactttcagtaatccgctcaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11059722 |
accatatatattagtctcttaaatcttaatcaagttttttgaatgataatgaaggattaataaccttcatcgcctctcgactttcagtaatccgctcaga |
11059623 |
T |
|
| Q |
117 |
caacttcttgtaatccttctcagcttcatccatcgcttgctggcatccttgactctgcatctataaacttcttaaattagcaagatcacagttaaaaatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
11059622 |
caacttcttgtaatccttctcagcttcatccatcgcttgctggcatccttgactctgcatctataaactttttaaattagcaacatcacagttaaaaatc |
11059523 |
T |
|
| Q |
217 |
aacaattaatcttcattaagatctgtctccattaaaacaaatttcataacatttgatctattaactaaatcaaaatttatcaactacgctaatctactta |
316 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
11059522 |
aacaattaatcttcattaagatctatctcgattaaaacaaatttcataacatttgatctattaactaaatcaaaattcatcaactacgcgaatctactta |
11059423 |
T |
|
| Q |
317 |
tctaattttctacttgcattctctcctttttctagtaaactagatctgattctactacagaagaataaatcacaggattaatcttaattaaaatctatct |
416 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11059422 |
tctaattttctacttgcattctctccattttctagtaaactagatctgattctactacagaagaataaatcacaggattaatcttaattaaaatctatct |
11059323 |
T |
|
| Q |
417 |
cgattaaatca-aattcgtcaaatacactaatctaattatctacttaatcagatctgaacctgctaatgtgaatattccgttaaatc |
502 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11059322 |
cgattaaatcagaattcgtcaaatacactaatctaattatctacttaatcagatctgaacctgctaatgtgaatattccgttaaatc |
11059236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University