View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3661_low_5 (Length: 465)
Name: NF3661_low_5
Description: NF3661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3661_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 303
Target Start/End: Complemental strand, 25196970 - 25196681
Alignment:
| Q |
13 |
aaaatatgacggggtaaaaataaatgagagaaagattccaacgaacacagataatatcagcattgaagttgctagatatgcacacaatgatacaggtcag |
112 |
Q |
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| T |
25196970 |
aaaatatgacggtataaaaataaatgagagaaagattccaacgaacacagataatatcagcattgaagttgctagatatgcacacaatgatataggtcag |
25196871 |
T |
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| Q |
113 |
agtacaattaatttttcaaatcacggatatgtgaactaatannnnnnnnnnnnnnaagagaatgtgaactatagtacccaaacttcccctaaataaaaag |
212 |
Q |
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| T |
25196870 |
agtacaattaatttttcaaatcacggatatgtgaactaatactttttttttttt-aagagaatgtgaactatagtacccaaacttcccctaaataaaaag |
25196772 |
T |
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| Q |
213 |
tacagtgtctaaactcattatatttaccatctctaatgaatattttttagtaatctagatataaccaaagtgtataatattactagattat |
303 |
Q |
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| T |
25196771 |
tacagtgtctaaactcattatatttaccatctctaatgaatattttttagtaatctagatataaccaaagtgtataatattactagattat |
25196681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 285 - 415
Target Start/End: Complemental strand, 25196673 - 25196544
Alignment:
| Q |
285 |
tataatattactagattattacatcagccgtcacccctccatcgatattcctatatccccggctgctataattttaataatactactagattattaagaa |
384 |
Q |
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| T |
25196673 |
tataatattactagattat-acatcagccgtcacccctccatcgatattcctatatccccggctgctataattttaataatactactagattattaagaa |
25196575 |
T |
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| Q |
385 |
gacacccccgtgagttagtgttagattttat |
415 |
Q |
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| T |
25196574 |
gacacccccgtgagttagtgttagattttat |
25196544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 442
Target Start/End: Complemental strand, 25196530 - 25196488
Alignment:
| Q |
400 |
tagtgttagattttataataaaattaagtatatatactagtat |
442 |
Q |
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| T |
25196530 |
tagtgttagattttataataaaattaagtatatatactagtat |
25196488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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