View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3661_low_6 (Length: 449)
Name: NF3661_low_6
Description: NF3661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3661_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 433
Target Start/End: Original strand, 22299404 - 22299828
Alignment:
| Q |
10 |
catcatcagtattaatcatcgataatgccattagtaaagtaatgcatgtatataaaacagatagaaaatcagttaattagcattactatccatcaccttg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22299404 |
catcatcagtattaatcatcgataatgccattagtaaagtaatgcatgtatataaaacagatagaaaatcagttaattagcattactatccatcaccttg |
22299503 |
T |
|
| Q |
110 |
cttacgaaacaagcaactcacgagacatgaaagccataaacctaacnnnnnnnnnnnnnnnnnnnnnnntacagtaagtgaaagtgataattcttgcatg |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
22299504 |
cttatgaaacaagcaactcacgagacatgaaagccataaacctaacaaaagaagaaaataaataaaaaaaacaataagtgaaagtgataattcttgcatg |
22299603 |
T |
|
| Q |
210 |
atgattctttttgacaataatacagcttgcaaagatttaatcacatgctcactcaacaactcctagcagtatcacatgcacaagctaaaatattaccaaa |
309 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22299604 |
atgattctttttgacaatattacagcttgcaaagatttaagcacatgctcactcaacaactcctagcagtatcacatgcacaagctaaaatattaccaaa |
22299703 |
T |
|
| Q |
310 |
atgatataaacaacaa-actcactttcttaaagaaaaaatagtagcaatatatttgacatgtaagaggaattgttgcaagctgttctctaagtaacaaac |
408 |
Q |
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|||||||||||||||| |||||||||||| |||||||| || ||||| |||| ||||||||||||||||||||||||| ||||||||||| ||| |||| |
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| T |
22299704 |
atgatataaacaacaatactcactttcttcaagaaaaattaatagcattatacttgacatgtaagaggaattgttgcatgctgttctctatgtaccaaag |
22299803 |
T |
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| Q |
409 |
ggtgctttgagtttgaggtaataat |
433 |
Q |
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| T |
22299804 |
gatgctttgagtttgaggtaataat |
22299828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 22293786 - 22293895
Alignment:
| Q |
260 |
actcaacaactcctagcagtatcacatgcacaagctaaaatattaccaaaatgatataaacaacaaactcactttcttaaagaaaaaatagtagcaatat |
359 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || ||||||||| |
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| T |
22293786 |
actcaacagctcccggcagtatcacatgcacaagctaaaatattaccaaaatgatacaaacaacaaactcactttcttaatgaaaaattaatagcaatat |
22293885 |
T |
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| Q |
360 |
atttgacatg |
369 |
Q |
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|||||||||| |
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| T |
22293886 |
atttgacatg |
22293895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 17112840 - 17112881
Alignment:
| Q |
352 |
agcaatatatttgacatgtaagaggaattgttgcaagctgtt |
393 |
Q |
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|||||||| || ||||||||||||||||||||||||| |||| |
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| T |
17112840 |
agcaatattttagacatgtaagaggaattgttgcaagttgtt |
17112881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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