View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3661_low_7 (Length: 418)

Name: NF3661_low_7
Description: NF3661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3661_low_7
NF3661_low_7
[»] chr2 (16 HSPs)
chr2 (282-418)||(35368116-35368252)
chr2 (6-159)||(35348491-35348644)
chr2 (287-418)||(35345987-35346118)
chr2 (299-412)||(35374296-35374409)
chr2 (282-418)||(35355589-35355725)
chr2 (297-412)||(35364256-35364371)
chr2 (278-351)||(35371482-35371555)
chr2 (56-168)||(35343846-35343958)
chr2 (278-361)||(35348306-35348389)
chr2 (212-278)||(35348424-35348490)
chr2 (278-418)||(35343558-35343698)
chr2 (286-361)||(35351004-35351079)
chr2 (282-342)||(35335492-35335552)
chr2 (282-360)||(35340577-35340656)
chr2 (209-269)||(35371372-35371432)
chr2 (207-261)||(35355370-35355425)
[»] chr4 (3 HSPs)
chr4 (309-361)||(9063702-9063754)
chr4 (309-362)||(9060405-9060458)
chr4 (309-361)||(9072768-9072820)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 282 - 418
Target Start/End: Original strand, 35368116 - 35368252
Alignment:
Q  282 gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgatcctc 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||      
T  35368116 gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccaataagaatcatgatccgt 35368215  T
Q  382 gttatgataatcttcttcaatgcaagatacagatgta 418  Q
    ||||||||||||||||||||| |||||||||||||||    
T  35368216 gttatgataatcttcttcaatacaagatacagatgta 35368252  T

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Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 35348644 - 35348491
Alignment:
Q  6 agcagcacagatgtcgcgaatcctatcattgcttgaggcgagttattttaagttagaattaaaatggaacctaactgggctacacactaactcgtgtgtt 105  Q
    |||| ||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| || |||||| |||||||||||||||    
T  35348644 agcaccacagatatcgcaaatcctattattgcttgaggcgagttattttgagttagaattaaaatggaacctaagtgtgctacatactaactcgtgtgtt 35348545  T
Q  106 ttgtgcgaaattgttttcgtgccaagtatcattgttcaaaacttaacactcttt 159  Q
    |||||||| ||| || ||||||||||||||||||||||||||||||||||||||    
T  35348544 ttgtgcgagattcttgtcgtgccaagtatcattgttcaaaacttaacactcttt 35348491  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 287 - 418
Target Start/End: Original strand, 35345987 - 35346118
Alignment:
Q  287 atgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgatcctcgttat 386  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||    |||||||||||||| | ||      
T  35345987 atgtaagttaacacattagagttttacgcagcgggagcatagtcataaccaccatcatcgtcatcatcgccttccttgtaagaatcttgatccccattgc 35346086  T
Q  387 gataatcttcttcaatgcaagatacagatgta 418  Q
    ||||||||||| |||| |||||||||||||||    
T  35346087 gataatcttctacaatacaagatacagatgta 35346118  T

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Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 299 - 412
Target Start/End: Original strand, 35374296 - 35374409
Alignment:
Q  299 acattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgatcctcgttatgataatcttctt 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |  |||||||| | ||  ||||||||||||||||||    
T  35374296 acattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcatcatcaccttcctggtaagaatctcggtctccgttatgataatcttctt 35374395  T
Q  399 caatgcaagataca 412  Q
    ||||||||||||||    
T  35374396 caatgcaagataca 35374409  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 282 - 418
Target Start/End: Original strand, 35355589 - 35355725
Alignment:
Q  282 gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgatcctc 381  Q
    |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    |||| ||| ||||  |    
T  35355589 gacttatgtaagttaacacattagagttttaggcagcaggagcatagtcataaccaccgtcatcgtcatcatcgccttccatgtaagagtctcgatctcc 35355688  T
Q  382 gttatgataatcttcttcaatgcaagatacagatgta 418  Q
     ||  |||||||||||||||||||||||||| |||||    
T  35355689 attgcgataatcttcttcaatgcaagatacatatgta 35355725  T

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Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 297 - 412
Target Start/End: Original strand, 35364256 - 35364371
Alignment:
Q  297 acacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgatcctcgttatgataatcttc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |  ||| | ||||| ||||   |||||||||    
T  35364256 acacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttccctgtataaatttcgatccccgttggtataatcttc 35364355  T
Q  397 ttcaatgcaagataca 412  Q
    ||||||||||||||||    
T  35364356 ttcaatgcaagataca 35364371  T

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Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 278 - 351
Target Start/End: Original strand, 35371482 - 35371555
Alignment:
Q  278 agaagactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtc 351  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  35371482 agaagactaatgtaagttaacacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcgtc 35371555  T

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Target: chr2; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 35343958 - 35343846
Alignment:
Q  56 agttagaattaaaatggaacctaactgggctacacactaactcgtgtgttttgtgcgaaattgttttcgtgccaagtatcattgttcaaaacttaacact 155  Q
    |||| ||||||||||||||| |   || |||||| |||||||||||||||||  |||||||| |||| ||||||||||||||| ||||||||||||||||    
T  35343958 agttggaattaaaatggaacatgtgtgagctacatactaactcgtgtgttttacgcgaaattatttttgtgccaagtatcattattcaaaacttaacact 35343859  T
Q  156 ctttcgtattgat 168  Q
    |||| ||||||||    
T  35343858 cttttgtattgat 35343846  T

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Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 35348389 - 35348306
Alignment:
Q  278 agaagactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcc 361  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||| ||||||    
T  35348389 agaagactaatgtaagttaacacattagagttttaggcagtgggagcatagtcgtaaccaccatcatcgtcatcatcaccttcc 35348306  T

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Target: chr2; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 35348490 - 35348424
Alignment:
Q  212 tgacatccagcctatttacaggcactaacaaactaatagttaagtactaaattcgaacaataaacga 278  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35348490 tgacatcgagcctatttacaggcactaacaaacaaatagttaagtactaaattcgaacaataaacga 35348424  T

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Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 418
Target Start/End: Complemental strand, 35343698 - 35343558
Alignment:
Q  278 agaagactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcccgagaagaatcttgat 377  Q
    |||||||||||||||||||||||||||| |||||| || || ||||||||||| |||||||| |||||||| |||||||||||     | || ||| |||    
T  35343698 agaagactaatgtaagttaacacattagtgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcgccttctttgcatgagtctcgat 35343599  T
Q  378 cctcgttatgataatcttcttcaatgcaagatacagatgta 418  Q
    |  | || ||||||| ||||||||||||||||||| |||||    
T  35343598 ctccattgtgataattttcttcaatgcaagatacacatgta 35343558  T

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Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 35351004 - 35351079
Alignment:
Q  286 aatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcc 361  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||| ||||||    
T  35351004 aatgtaagttagcacattagagtcttatgcagcgggagcgtagtcataaccaccatcatcgtcatcatcaccttcc 35351079  T

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Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 35335492 - 35335552
Alignment:
Q  282 gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtc 342  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  35335492 gactaatgtaagttaacacattactactttatgcagcgggagcatagtcataaccaccgtc 35335552  T

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Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 35340577 - 35340656
Alignment:
Q  282 gactaatgtaagttaacacattagagtttt-atgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttc 360  Q
    ||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||| || ||||| ||||| |||||    
T  35340577 gactaatataagttcacacattagagtttttatgcagctggagcatagtcataaccaccatcgtcgtcatcatcaccttc 35340656  T

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Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 35371372 - 35371432
Alignment:
Q  209 taatgacatccagcctatttacaggcactaacaaactaatagttaagtactaaattcgaac 269  Q
    |||||||||| |||||||||| | ||| ||||||||||||||||||||||||| |||||||    
T  35371372 taatgacatctagcctatttataagcaataacaaactaatagttaagtactaatttcgaac 35371432  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 35355370 - 35355425
Alignment:
Q  207 tataatgacatccagcctatttac-aggcactaacaaactaatagttaagtactaa 261  Q
    |||||||||||| |||||||| |  |||||||||||||||||||||||||||||||    
T  35355370 tataatgacatcgagcctattaaataggcactaacaaactaatagttaagtactaa 35355425  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 9063754 - 9063702
Alignment:
Q  309 tttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcc 361  Q
    |||| |||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  9063754 tttaagcagcgggagcatagtcataaccaccatcatcgtcatcatcaccttcc 9063702  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 9060458 - 9060405
Alignment:
Q  309 tttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttccc 362  Q
    |||| |||||||||||||| ||||| ||||| |||||||| ||||| |||||||    
T  9060458 tttaagcagcgggagcataatcatatccaccatcatcgtcatcatcaccttccc 9060405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 9072820 - 9072768
Alignment:
Q  309 tttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcc 361  Q
    |||| ||||| |||||||||||||| ||||| |||||||| ||||| ||||||    
T  9072820 tttaagcagcaggagcatagtcatagccaccatcatcgtcatcatcaccttcc 9072768  T

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