View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3661_low_8 (Length: 338)
Name: NF3661_low_8
Description: NF3661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3661_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 35343614 - 35343400
Alignment:
| Q |
5 |
ttgcatgagtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatccatgct |
104 |
Q |
| |
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|||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| |
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| T |
35343614 |
ttgcatgagtctcgatctccattgtgataattttcttcaatgcaagatacacatgtataactaatccaatcaccgtt---accttcaccatatccatgct |
35343518 |
T |
|
| Q |
105 |
gcttgcactttggagtaatggccaaagaaatggatgccatttttgttttaacgctggctatgtaaaaagtgtatgttgaaaagaagaaaatggaattaga |
204 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
35343517 |
gctcgcactttggaataatggccaaagaaatggatgccattttggtttttacgctggctatgtgaaaagtgtatgttaaaaagaagaaaatggaattagt |
35343418 |
T |
|
| Q |
205 |
tatacgatatgctaagat |
222 |
Q |
| |
|
|||| ||||||||||||| |
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| T |
35343417 |
tatatgatatgctaagat |
35343400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 35348309 - 35348092
Alignment:
| Q |
1 |
ttccttgcatgagtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||| |
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| T |
35348309 |
ttccttgcatgagtctcgatctccattgcgattatcttctttaatgcaagatacacttgtataaccaaaccaatcacc---gttaccttcactgtatcca |
35348213 |
T |
|
| Q |
101 |
tgctgcttgcactttggagtaatggccaaagaaatggatgccatttttgttttaacgctggctatg-taaaaagtgtatgttgaaaagaagaaaatggaa |
199 |
Q |
| |
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|| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||| |
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| T |
35348212 |
tgatgcttgcactttggagtaatagccaaagaaatggatgccatttttgtttttacgctggctatgttaaaaaatgtatgttataaagaagaaaatggaa |
35348113 |
T |
|
| Q |
200 |
ttagatatacgatatgctaag |
220 |
Q |
| |
|
|||| |||| ||||||||||| |
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|
| T |
35348112 |
ttagttatatgatatgctaag |
35348092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 35355675 - 35355876
Alignment:
| Q |
11 |
gagtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatccatgctgcttgc |
110 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||||||||| ||||| |
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| T |
35355675 |
gagtctcgatctccattgcgataatcttcttcaatgcaagatacatatgtataaccaaaccaatcaccatt---accttcatcatatccatgctccttgc |
35355771 |
T |
|
| Q |
111 |
actttggagtaatggccaaagaaatggatgccatttttgttttaacgctggctatgtaaaaagtgtatgtt-gaaaagaagaaaatggaattagatatac |
209 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
35355772 |
actttggagtaatggccatagaaattgatgccattttggttttgacgcttgctatgtaaaaagtgtatgttggaaaagaagaaaatggaattagttatat |
35355871 |
T |
|
| Q |
210 |
gatat |
214 |
Q |
| |
|
||||| |
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|
| T |
35355872 |
gatat |
35355876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 35371571 - 35371708
Alignment:
| Q |
1 |
ttccttgcatgagtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| || |
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| T |
35371571 |
ttccttgcatgagtctcgatctccattgcggtaatcttcttcaatgcaagatacacttgtataatcaaaccaa---------ttaccttcaccatataca |
35371661 |
T |
|
| Q |
101 |
tgctgcttgcactttggagtaatggccaaagaaatggatgccatttt |
147 |
Q |
| |
|
|| |||||||||||| ||| |||| ||| |||||||||||||||| |
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| T |
35371662 |
tgttgcttgcactttagagcaatgaccatcaaaatggatgccatttt |
35371708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 35346058 - 35346220
Alignment:
| Q |
1 |
ttccttgcatgagtctcgatctccattgcgattatcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatcca |
100 |
Q |
| |
|
||||||| | || ||| |||| |||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||| || || |
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|
| T |
35346058 |
ttccttgtaagaatcttgatccccattgcgataatcttctacaatacaagatacagatgtataaccaaaccaatcaccgttg---ccttcaccacatgca |
35346154 |
T |
|
| Q |
101 |
tgctgcttgcactttggagtaatggccaaagaaatggatgccatttttgttttaacgctggctatg |
166 |
Q |
| |
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| |||||||||| ||||| |||| || |||||||||||||||| ||||| | |||||||||| |
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|
| T |
35346155 |
ttctgcttgcacaatggagcaatgaccgtgaaaatggatgccattttagttttgaagctggctatg |
35346220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 35374388 - 35374492
Alignment:
| Q |
34 |
atcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatccatgctgcttgcactttggagtaatggccaaagaa |
133 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||| |||||||| ||| ||| |||| ||| ||| |
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| T |
35374388 |
atcttcttcaatgcaagatacacttgtataatcaaaccaa---------ttaccttcaccatatgcatgttgcttgcagtttagagcaatgaccatggaa |
35374478 |
T |
|
| Q |
134 |
atggatgccatttt |
147 |
Q |
| |
|
|||||||||||||| |
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| T |
35374479 |
atggatgccatttt |
35374492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 35364350 - 35364396
Alignment:
| Q |
34 |
atcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgt |
80 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
35364350 |
atcttcttcaatgcaagatacacacgtataaccgaaccaatcaccgt |
35364396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 35368225 - 35368333
Alignment:
| Q |
34 |
atcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccatatccatgctgcttgcactttggagtaatggccaaagaa |
133 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||||||||||| | | ||||||||||||| ||||||||||||| ||| ||| |||| ||| ||| |
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|
| T |
35368225 |
atcttcttcaatacaagatacagatgtacaaccaaaccaatcaac---ttcaccttcaccatatgcatgctgcttgcagtttagagcaatgaccatggaa |
35368321 |
T |
|
| Q |
134 |
atggatgccatt |
145 |
Q |
| |
|
||| || ||||| |
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|
| T |
35368322 |
atgaataccatt |
35368333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 35335586 - 35335699
Alignment:
| Q |
34 |
atcttcttcaatgcaagatacacatgtataaccaaaccaatcaccgttgttaccttcaccat---atccatgctgcttgcactttggagtaatggccaaa |
130 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||||||||| || | |||||||| | || |||| |||||||||||||||| |||| ||| |
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|
| T |
35335586 |
atcttcttcaatgcaagatatatttgtgtaaccaaaccaatcacagtcg---ccttcaccgttaaatgcatgttgcttgcactttggagcaatgaccatg |
35335682 |
T |
|
| Q |
131 |
gaaatggatgccatttt |
147 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35335683 |
gaaatggatgccatttt |
35335699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 35351227 - 35351299
Alignment:
| Q |
131 |
gaaatggatgccatttttgttttaacgctggctatgtaaaaagtgtatgttgaaaagaagaaaatggaattag |
203 |
Q |
| |
|
||||||||||||||||| ||||| |||||| ||||| |||||| | | || ||||||||||||||||||||| |
|
|
| T |
35351227 |
gaaatggatgccattttggttttgacgctgattatgtgaaaagtttgtatttaaaagaagaaaatggaattag |
35351299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 35340805 - 35340876
Alignment:
| Q |
131 |
gaaatggatgccatttttgttttaacgctggctatgtaaaaagtgtatgttgaaaagaagaaaatggaatta |
202 |
Q |
| |
|
|||||||||| |||||| ||| | | | ||||||||| |||||||| || | |||||||||||||||||||| |
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|
| T |
35340805 |
gaaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaatta |
35340876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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