View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3661_low_9 (Length: 262)

Name: NF3661_low_9
Description: NF3661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3661_low_9
NF3661_low_9
[»] chr2 (5 HSPs)
chr2 (32-145)||(40022282-40022395)
chr2 (166-255)||(40021663-40021752)
chr2 (34-68)||(17379842-17379876)
chr2 (34-71)||(36347755-36347792)
chr2 (34-66)||(35736173-35736205)
[»] chr4 (10 HSPs)
chr4 (34-73)||(54935283-54935322)
chr4 (34-67)||(47433923-47433956)
chr4 (34-66)||(4437628-4437660)
chr4 (34-66)||(22920979-22921011)
chr4 (34-66)||(22970788-22970820)
chr4 (34-66)||(26166935-26166967)
chr4 (34-66)||(41174354-41174386)
chr4 (34-66)||(45741888-45741920)
chr4 (34-66)||(49735706-49735738)
chr4 (34-66)||(54320648-54320680)
[»] chr7 (2 HSPs)
chr7 (36-66)||(39646467-39646497)
chr7 (34-70)||(36267547-36267583)
[»] chr6 (4 HSPs)
chr6 (34-68)||(1300625-1300659)
chr6 (35-68)||(31798914-31798947)
chr6 (34-66)||(15323223-15323255)
chr6 (34-66)||(15353362-15353394)
[»] chr5 (3 HSPs)
chr5 (34-68)||(5688604-5688638)
chr5 (34-68)||(14245260-14245294)
chr5 (34-66)||(16938477-16938509)
[»] scaffold0012 (1 HSPs)
scaffold0012 (34-67)||(184608-184641)
[»] chr1 (2 HSPs)
chr1 (34-67)||(26941047-26941080)
chr1 (34-67)||(30010329-30010362)
[»] chr8 (1 HSPs)
chr8 (32-68)||(11785738-11785774)
[»] chr3 (2 HSPs)
chr3 (34-66)||(34641000-34641032)
chr3 (34-66)||(37102353-37102385)


Alignment Details
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 40022395 - 40022282
Alignment:
Q  32 taccctcctaaaccgtcaatccaaacacaccctaagaagaatgaaggaggggttatgaaggacgggggcaagggaggtaaagggggtgttgttgtttgaa 131  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  40022395 taccctcctaaaccctcaatccaaacacaccctaagaagaatgaaggaggggttatgaaggacggaggcaagggaggtaaagggggtgttgttgtttgag 40022296  T
Q  132 gtaccagtggaagt 145  Q
    ||||||||||||||    
T  40022295 gtaccagtggaagt 40022282  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 40021752 - 40021663
Alignment:
Q  166 gtgtcgttggattagtgcaagatattgatttaatgcagttgttacaagaacgtattcaggatgcgtgtttgatagatattcaagtggtgc 255  Q
    |||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  40021752 gtgtcgttggattagtgcaagatattgactcaatgcagttgttacaacaacgcattcaggatgcgtgtttgatagatattcaagtggtgc 40021663  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 17379876 - 17379842
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaaga 68  Q
    |||||||||||| ||||||||||||||||||||||    
T  17379876 ccctcctaaaccctcaatccaaacacaccctaaga 17379842  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 36347755 - 36347792
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaagaaga 71  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  36347755 ccctcctaaaccctcaatccaaacacaccctaataaga 36347792  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 35736205 - 35736173
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  35736205 ccctcctaaaccctcaatccaaacacaccctaa 35736173  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 54935283 - 54935322
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaagaagaat 73  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  54935283 ccctcctaaaccctccatccaaacacaccctaagaagaat 54935322  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 47433923 - 47433956
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaag 67  Q
    ||||||||||||||||| ||||||||||||||||    
T  47433923 ccctcctaaaccgtcaacccaaacacaccctaag 47433956  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 4437628 - 4437660
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  4437628 ccctcctaaaccttcaatccaaacacaccctaa 4437660  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 22921011 - 22920979
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  22921011 ccctcctaaaccatcaatccaaacacaccctaa 22920979  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 22970788 - 22970820
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  22970788 ccctcctaaaccatcaatccaaacacaccctaa 22970820  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 26166967 - 26166935
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  26166967 ccctcctaaaccctcaatccaaacacaccctaa 26166935  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 41174386 - 41174354
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  41174386 ccctcctaaaccctcaatccaaacacaccctaa 41174354  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 45741920 - 45741888
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  45741920 ccctcctaaaccctcaatccaaacacaccctaa 45741888  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 49735706 - 49735738
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  49735706 ccctcctaaaccctcaatccaaacacaccctaa 49735738  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 54320648 - 54320680
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  54320648 ccctcctaaaccctcaatccaaacacaccctaa 54320680  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 39646497 - 39646467
Alignment:
Q  36 ctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||||||||||||||||||||||    
T  39646497 ctcctaaaccgtcaatccaaacacaccctaa 39646467  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 36267583 - 36267547
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaagaag 70  Q
    |||||||||||| || |||||||||||||||||||||    
T  36267583 ccctcctaaaccctccatccaaacacaccctaagaag 36267547  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 1300659 - 1300625
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaaga 68  Q
    |||||||||||| ||||||||||||||||||||||    
T  1300659 ccctcctaaaccctcaatccaaacacaccctaaga 1300625  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 31798947 - 31798914
Alignment:
Q  35 cctcctaaaccgtcaatccaaacacaccctaaga 68  Q
    ||||||||||| ||||||||||||||||||||||    
T  31798947 cctcctaaaccctcaatccaaacacaccctaaga 31798914  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 15323255 - 15323223
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  15323255 ccctcctaaaccctcaatccaaacacaccctaa 15323223  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 15353394 - 15353362
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  15353394 ccctcctaaaccctcaatccaaacacaccctaa 15353362  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 5688604 - 5688638
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaaga 68  Q
    |||||||||||| ||||||||||||||||||||||    
T  5688604 ccctcctaaaccctcaatccaaacacaccctaaga 5688638  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 14245260 - 14245294
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaaga 68  Q
    |||||||||||| ||||||||||||||||||||||    
T  14245260 ccctcctaaaccctcaatccaaacacaccctaaga 14245294  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 16938509 - 16938477
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  16938509 ccctcctaaaccctcaatccaaacacaccctaa 16938477  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 184641 - 184608
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaag 67  Q
    |||||||||||| |||||||||||||||||||||    
T  184641 ccctcctaaaccctcaatccaaacacaccctaag 184608  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 26941047 - 26941080
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaag 67  Q
    |||||||||||| |||||||||||||||||||||    
T  26941047 ccctcctaaaccctcaatccaaacacaccctaag 26941080  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 30010362 - 30010329
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaag 67  Q
    |||||||||||| |||||||||||||||||||||    
T  30010362 ccctcctaaaccctcaatccaaacacaccctaag 30010329  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 11785738 - 11785774
Alignment:
Q  32 taccctcctaaaccgtcaatccaaacacaccctaaga 68  Q
    |||||||||||||| || |||||||||||||||||||    
T  11785738 taccctcctaaaccctccatccaaacacaccctaaga 11785774  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 34641032 - 34641000
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  34641032 ccctcctaaaccctcaatccaaacacaccctaa 34641000  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 37102353 - 37102385
Alignment:
Q  34 ccctcctaaaccgtcaatccaaacacaccctaa 66  Q
    |||||||||||| ||||||||||||||||||||    
T  37102353 ccctcctaaaccctcaatccaaacacaccctaa 37102385  T

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