View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3662_high_2 (Length: 328)
Name: NF3662_high_2
Description: NF3662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3662_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 50821936 - 50822238
Alignment:
| Q |
18 |
aaccttgtgcgtagtgaaggcaaaataagatggtgaatacctaatcgttttacacagttctcaatcgagtgaatcaatcttttacacaaaccctgcgatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50821936 |
aaccttgtgcgtagtgaaggcaaaataagatggtgaatacctaatcgttttacacagttctcaatcgagtgaatcaatcttttacacaaaccctgcgatc |
50822035 |
T |
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| Q |
118 |
taaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgccctaaaaacagcaacactggcacattttccttccttttgaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50822036 |
taaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgccctaaaaacagcaacactggcacattttccttccttttgaat |
50822135 |
T |
|
| Q |
218 |
tatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccaccatgctttcaattcccggaccaaagccataacataacgtctct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50822136 |
tatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccaccatgctttcaattcccggaccaaagccataacataacgtttct |
50822235 |
T |
|
| Q |
318 |
gct |
320 |
Q |
| |
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||| |
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| T |
50822236 |
gct |
50822238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 50853925 - 50853623
Alignment:
| Q |
18 |
aaccttgtgcgtagtgaaggcaaaataagatggtgaatacctaatcgttttacacagttctcaatcgagtgaatcaatcttttacacaaaccctgcgatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853925 |
aaccttgtgcgtagtgaaggcaaaataagatggtgaatacctaatcgttttacacagttctcaatcgagtgaatcaatcttttacacaaaccctgcgatc |
50853826 |
T |
|
| Q |
118 |
taaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgccctaaaaacagcaacactggcacattttccttccttttgaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853825 |
taaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgccctaaaaacagcaacactggcacattttccttccttttgaat |
50853726 |
T |
|
| Q |
218 |
tatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccaccatgctttcaattcccggaccaaagccataacataacgtctct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50853725 |
tatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccaccatgctttcaattcccggaccaaagccataacataacgtttct |
50853626 |
T |
|
| Q |
318 |
gct |
320 |
Q |
| |
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||| |
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|
| T |
50853625 |
gct |
50853623 |
T |
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