View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3662_high_5 (Length: 280)
Name: NF3662_high_5
Description: NF3662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3662_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 1572187 - 1571936
Alignment:
| Q |
11 |
atgaaagtgtgaaactggtagatgttgttggttgttaccacatcgtttatgttgcaacacttaaaactcattgttaatagtgttaagtataattagaaga |
110 |
Q |
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| T |
1572187 |
atgaaagtgtgaaactggtagatgttgttggttgttaccgcatcgtttatgttgcaacacttaa--ctcattgttaacagtgttaagtataattagaaga |
1572090 |
T |
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| Q |
111 |
ggaaagattacaagcatcagcatcaatatcaattcaatggcagcctctactactttctccaacacattatttctttctccaatttctcatcattctcctt |
210 |
Q |
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| T |
1572089 |
ggaaagattacaagcatcagcatcaatatcaattcaatggcagcctctactactttctccaacacattatttctttctccaatttctcatcattctcctt |
1571990 |
T |
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| Q |
211 |
caaacctcaattgtcttccactcatcatcaatttcccaagatcccatttcaaac |
264 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1571989 |
caaaacccaattgtcttccactcatcatcaatttcccaagatcccatttcaaac |
1571936 |
T |
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