View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3662_high_6 (Length: 250)
Name: NF3662_high_6
Description: NF3662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3662_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 50822290 - 50822508
Alignment:
| Q |
19 |
gtatcatatctgatgatgagagatgatgctgatgcatcatcaatggtaacattctcaaaaagttgcttttgtaaatcatcaaaacatcccttacacgaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50822290 |
gtatcatatctgatgatgagagatgatgctgatgcatcatcaatggtaacattctcaaaaagttgcttttgtaaatcatcaaaacatcccttacacgaat |
50822389 |
T |
|
| Q |
119 |
tgctgcagaaagtattaagccccataatcacataatctatacaagcaatattacacaacccacaccttagcattccctcttcatcaagagtttccatgga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50822390 |
tgctgcagaaagtattaagccccataatcacataatctatacaagcaatattacacaacccacaccttagcattccctcttcatcaagagtttccatgga |
50822489 |
T |
|
| Q |
219 |
aacgaagtcatccacctct |
237 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
50822490 |
aacgaagtcatccacctct |
50822508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 50853571 - 50853353
Alignment:
| Q |
19 |
gtatcatatctgatgatgagagatgatgctgatgcatcatcaatggtaacattctcaaaaagttgcttttgtaaatcatcaaaacatcccttacacgaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50853571 |
gtatcatatctgatgatgagagatgatgctgatgcatcatcaatggtaacattctcaaaaagttgcttttgtaaatcatcaaaacatcccttacacgaat |
50853472 |
T |
|
| Q |
119 |
tgctgcagaaagtattaagccccataatcacataatctatacaagcaatattacacaacccacaccttagcattccctcttcatcaagagtttccatgga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50853471 |
tgctgcagaaagtattaagccccataatcacataatctatacaagcaatattacacaacccacaccttagcattccctcttcatcaagagtttccatgga |
50853372 |
T |
|
| Q |
219 |
aacgaagtcatccacctct |
237 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
50853371 |
aacgaagtcatccacctct |
50853353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University