View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3662_high_8 (Length: 238)
Name: NF3662_high_8
Description: NF3662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3662_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 42391880 - 42392068
Alignment:
| Q |
17 |
agaaatgggttcagcggcaacaatggcgatgacagcactctatttcaccaccatcaaatcaaccaaactcacttctaccttccgcactctctcccgcttc |
116 |
Q |
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| T |
42391880 |
agaaatgggttcagcggcaacaatggcgatgacagcactctatttcaccaccatcaaatcaaccaaactcacttctaccttccgcactctcccccgcttc |
42391979 |
T |
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| Q |
117 |
acttgttcctcctcttccaaattcaacatctctttctctccctctaaccccaaacccaagcccactcctcagcccaaagctcaaacccc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
42391980 |
acttgttcctcctcttccaaattcaacatctctttctctccctctaaccccaaacccaagcctactcctcagcccaaaactcaaacccc |
42392068 |
T |
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