View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3662_low_1 (Length: 700)
Name: NF3662_low_1
Description: NF3662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3662_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 620; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 1 - 683
Target Start/End: Complemental strand, 1769307 - 1768621
Alignment:
| Q |
1 |
atagagatgctaaacatattttttaaaataaaaagccctaagggaggcattatttaagtaaccc-----tagaaatttatcttgaaaatagaggtcaagc |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
1769307 |
atagagatgctaaacatattttttaaaataaaaagccctaaggg-ggcattgtttaagtaacccataaatagaaatttatcttgaaaatagaggtcaaac |
1769209 |
T |
|
| Q |
96 |
atatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaagaaagaagactagtttcatatgtagtatataaatttg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1769208 |
atatcaaaatcataacttcacaattttcaatgtaaaagttattagttttagatgcttaaacaagaaagaagactagtttcatatgtagtatataaatttg |
1769109 |
T |
|
| Q |
196 |
tagttttcatagacaagaaagactatcattgattttgaagatgttcaaacaggaaaagcactttgtgttgattcatggaggtatccatggtgcatggtgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1769108 |
cagttttcatagacaagaaagactatcattgattttgaagatgttcaaacaggaaaagcactttgtgttgattcatggaggcatccatggtgcatggtgt |
1769009 |
T |
|
| Q |
296 |
tggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaagcagatgcaagaggttc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1769008 |
tggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaagcagatgcaagaggttc |
1768909 |
T |
|
| Q |
396 |
attcaatttctgaataccatcaacctttgatgacatttatggagtcaattccttgtgaggagaatgtgattcttgttggtcatagtcttggagggttgtc |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1768908 |
attcaatttctgaataccatcaacctttgatgacatttatggagtcacttcctcttgaggagaaagtggttcttgttggtcatagtcttggagggttgtc |
1768809 |
T |
|
| Q |
496 |
tgtgtctattgctatggaaaactaccctcacaaaatctttgttgcagttttcatcacagccactgttgtcactcaaaatctcacttatcctgcttttctt |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1768808 |
tgtgtctattgctatggaaaactaccctcacaaaatctttgttgcagttttcatcacagccactgttgtcactcaaaatctcacttatcctgcttttctt |
1768709 |
T |
|
| Q |
596 |
caagaggtactttacatacaatgatactatttgcatatttacactctgctcacaagtcacataattaacattgactttccatttgtaa |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1768708 |
caagaggtactttacatacaatgatactatttgcatatttacactctgctcacaagtcacataattaacattgactttccatttgtaa |
1768621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 251 - 552
Target Start/End: Complemental strand, 1801734 - 1801433
Alignment:
| Q |
251 |
aagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactag |
350 |
Q |
| |
|
|||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||||| || |||| |||||||||||| || ||| | | | |
|
|
| T |
1801734 |
aagcactttgtgcttgttcatggagctttccatggtgcatggtgttggtataaggttgcaactatgcttaaattagctggtcataatgttacaactattg |
1801635 |
T |
|
| Q |
351 |
acatggctgcttgtggtaccaatccaaagcagatgcaagaggttcattcaatttctgaataccatcaacctttgatgacatttatggagtcaattccttg |
450 |
Q |
| |
|
|| ||||||||||||||| || ||||| ||| | |||||| ||||||||||||| |||| || ||||||| |||||||||||||| || ||||| |
|
|
| T |
1801634 |
acttggctgcttgtggtatcagtccaatccaggttcaagagattcattcaatttcacaatattatgaacctttcatgacatttatggaatctcttcctcc |
1801535 |
T |
|
| Q |
451 |
tgaggagaatgtgattcttgttggtcatagtcttggagggttgtctgtgtctattgctatggaaaactaccctcacaaaatctttgttgcagttttcatc |
550 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||| | | | ||| ||||||||||||| | |||| | ||||| | |||||||||||| ||| |
|
|
| T |
1801534 |
aaaggagaaggtgattcttgtgggtcatagttttggagggatacccttatctgttgctatggaaaaattccctaagaaaatttctgttgcagtttttatc |
1801435 |
T |
|
| Q |
551 |
ac |
552 |
Q |
| |
|
|| |
|
|
| T |
1801434 |
ac |
1801433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 250 - 490
Target Start/End: Complemental strand, 1784925 - 1784685
Alignment:
| Q |
250 |
aaagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcacta |
349 |
Q |
| |
|
||||||||||||| | ||||||||| | |||||||| ||||||||||||||||||||||||| || ||||||||||||||||| || ||| | | |
|
|
| T |
1784925 |
aaagcactttgtgcttgttcatggagctggccatggtgaatggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactatt |
1784826 |
T |
|
| Q |
350 |
gacatggctgcttgtggtaccaatccaaagcagatgcaagaggttcattcaatttctgaataccatcaacctttgatgacatttatggagtcaattcctt |
449 |
Q |
| |
|
||||||||||||| |||| |||||||| || | |||||| ||||||||||||| |||| || |||| ||||||||||||||||| || ||||| |
|
|
| T |
1784825 |
gacatggctgcttcaggtatcaatccaatacaagttcaagagattcattcaatttcaaaatattatgaaccattgatgacatttatggaatctcttcctc |
1784726 |
T |
|
| Q |
450 |
gtgaggagaatgtgattcttgttggtcatagtcttggaggg |
490 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
1784725 |
caaaggagaaggtgattcttgtgggtcatagttatggaggg |
1784685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 257 - 546
Target Start/End: Complemental strand, 1772718 - 1772429
Alignment:
| Q |
257 |
tttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatgg |
356 |
Q |
| |
|
|||||| |||||||||| || | ||||||||||||||||||||||||||| | |||| || ||||||||||||||||| || ||| | | || ||| |
|
|
| T |
1772718 |
tttgtgctgattcatggtggaagccatggtgcatggtgttggtataaggtggtaactatgcttaaatcagctggtcataatgttacaactattgaattgg |
1772619 |
T |
|
| Q |
357 |
ctgcttgtggtaccaatccaaagcagatgcaagaggttcattcaatttctgaataccatcaacctttgatgacatttatggagtcaattccttgtgagga |
456 |
Q |
| |
|
|||||| |||| |||||||| || | |||||| ||||||||||||| |||| || |||| ||||||||||||||||| || ||||| | || |
|
|
| T |
1772618 |
ctgcttcaggtatcaatccaatacaagtccaagagattcattcaatttcaaaatattatgaacccttgatgacatttatggaatctcttcctccaaatga |
1772519 |
T |
|
| Q |
457 |
gaatgtgattcttgttggtcatagtcttggagggttgtctgtgtctattgctatggaaaactaccctcacaaaatctttgttgcagtttt |
546 |
Q |
| |
|
||| || |||||||||||||||||||| || ||| ||||| ||| ||||||||||||| | ||| || ||||||| ||||||||||| |
|
|
| T |
1772518 |
gaaggtaattcttgttggtcatagtctgggtggggtgtctacatctgttgctatggaaaagttcccacaaaaaatctcagttgcagtttt |
1772429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 251 - 490
Target Start/End: Complemental strand, 1777690 - 1777448
Alignment:
| Q |
251 |
aagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactag |
350 |
Q |
| |
|
|||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||| | ||||||||||||||||| || || || | | |
|
|
| T |
1777690 |
aagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattg |
1777591 |
T |
|
| Q |
351 |
acatggctgcttgtggtaccaatccaaagcagatgcaagaggttcat---tcaatttctgaataccatcaacctttgatgacatttatggagtcaattcc |
447 |
Q |
| |
|
| ||||||||||||||| || ||||| ||| | |||||| ||||| |||||||| |||| ||| |||||||||| ||||||| || || |||| |
|
|
| T |
1777590 |
aattggctgcttgtggtatcagtccaatacaggttcaagagattcattcatcaatttcaaaatatcatgaacctttgatttcatttatagaatctcttcc |
1777491 |
T |
|
| Q |
448 |
ttgtgaggagaatgtgattcttgttggtcatagtcttggaggg |
490 |
Q |
| |
|
| |||| || ||||||||||| ||||||||| |||||||| |
|
|
| T |
1777490 |
tccaaaggaaaaggtgattcttgtgggtcatagttttggaggg |
1777448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 251 - 552
Target Start/End: Original strand, 25727524 - 25727825
Alignment:
| Q |
251 |
aagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactag |
350 |
Q |
| |
|
|||||||||||| | |||||||| | ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| || ||| | | | |
|
|
| T |
25727524 |
aagcactttgtgcttgttcatggacctttccatggtgcatggtcttggtataaggttgcaactatgctgaaatcagctggtcataatgttacaactattg |
25727623 |
T |
|
| Q |
351 |
acatggctgcttgtggtaccaatccaaagcagatgcaagaggttcattcaatttctgaataccatcaacctttgatgacatttatggagtcaattccttg |
450 |
Q |
| |
|
| |||||| |||||||| || ||||| ||| | |||||| ||||||||||||| |||| || ||||||| |||||||||||||| || ||||| |
|
|
| T |
25727624 |
aattggctggttgtggtatcagtccaatacaggttcaagagattcattcaatttcacaatattatgaaccttttatgacatttatggaatctcttcctcc |
25727723 |
T |
|
| Q |
451 |
tgaggagaatgtgattcttgttggtcatagtcttggagggttgtctgtgtctattgctatggaaaactaccctcacaaaatctttgttgcagttttcatc |
550 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||| | | | ||| ||||||||||||| | |||| ||||||| | |||||||||||| ||| |
|
|
| T |
25727724 |
aaaggagaaggtgattcttgtgggtcatagttttggagggatacccttatctgttgctatggaaaaattccctaacaaaatttctgttgcagtttttatc |
25727823 |
T |
|
| Q |
551 |
ac |
552 |
Q |
| |
|
|| |
|
|
| T |
25727824 |
ac |
25727825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 35558883 - 35558962
Alignment:
| Q |
71 |
tttatcttgaaaatagaggtcaagcatatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaa |
155 |
Q |
| |
|
||||||||||||||| | ||||| ||||| |||||||| || |||||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
35558883 |
tttatcttgaaaatacaagtcaaacatataaaaatcatgac-----aatttttaacgtaaaagttattaattttagatgcttaaa |
35558962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 6807634 - 6807571
Alignment:
| Q |
318 |
taaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaagca |
381 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||||||| ||| | | |||||||||| |
|
|
| T |
6807634 |
taaaatctgctggacacgaagtcacagcactagacatggctgcttctggaatccatccaaagca |
6807571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 6814419 - 6814356
Alignment:
| Q |
318 |
taaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaagca |
381 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||||||| ||| | | |||||||||| |
|
|
| T |
6814419 |
taaaatctgctggacacgaagtcacagcactagacatggctgcttctggaatccatccaaagca |
6814356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 8633832 - 8633778
Alignment:
| Q |
105 |
tcataacttcacaattttcaaggtaaaagtta-ttagttttagatgcttaaacaa |
158 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| | | |||||||||||||||||| |
|
|
| T |
8633832 |
tcataactacacaattttcaaggtaaaacttactaaattttagatgcttaaacaa |
8633778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 38902233 - 38902172
Alignment:
| Q |
96 |
atatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaa |
158 |
Q |
| |
|
|||| ||| |||||| | |||||||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
38902233 |
atataaaagtcataattacacaattttcaatgtaaaagt-attatttttagatgcttaaacaa |
38902172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 4552219 - 4552271
Alignment:
| Q |
106 |
cataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaa |
158 |
Q |
| |
|
||||||| |||||||||||| |||| | ||| || |||||||||||||||||| |
|
|
| T |
4552219 |
cataactacacaattttcaacgtaataattactatttttagatgcttaaacaa |
4552271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 15064578 - 15064654
Alignment:
| Q |
77 |
ttgaaaatagaggtcaagcatatc-aaaatcataacttcacaattttcaaggtaaaagttattagttttagatgctt |
152 |
Q |
| |
|
||||||||| | ||||| ||||| |||||||||| | |||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
15064578 |
ttgaaaatacaagtcaaacatatgtaaaatcataaatacacaattttcaatataaaagttactacttttagatgctt |
15064654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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